Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 3.0e-130 468.4 219 100.0
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 8.7e-85 317.4 219 71.7
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 5.5e-71 271.6 219 60.3
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 3.7e-67 258.8 219 58.0
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 6.2e-67 258.1 219 58.0
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 1.1e-66 257.3 219 57.5
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 9.0e-66 254.2 219 57.1
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 9.0e-66 254.2 219 57.5
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 9.0e-66 254.2 219 57.5
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 9.0e-66 254.2 219 57.5
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.2e-65 253.8 219 57.1
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 1.2e-65 253.8 219 55.3
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 2.0e-65 253.1 218 56.0
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 5.8e-65 251.5 219 54.3
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 3.8e-64 248.8 219 54.3
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 6.5e-64 248.1 219 54.8
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 8.4e-64 247.7 219 53.4
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 8.4e-64 247.7 219 53.4
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.1e-63 247.3 219 54.3
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 1.1e-63 247.3 219 54.8
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 1.9e-63 246.5 219 54.8
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 3.2e-63 245.7 219 54.3
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 4.2e-63 245.4 218 56.0
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 4.2e-63 245.4 219 54.3
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 4.2e-63 245.4 219 54.8
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 5.5e-63 245.0 219 54.3
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.6e-62 243.4 219 52.5
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 2.1e-62 243.0 219 52.1
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 2.7e-62 242.7 219 54.8
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 2.7e-62 242.7 219 53.9
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 2.7e-62 242.7 219 53.0
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 1.8e-61 240.0 219 53.4
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 2.3e-61 239.6 219 53.9
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 2.3e-61 239.6 219 53.0
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 3.9e-61 238.8 219 53.0
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 5.1e-61 238.4 219 52.1
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 9.6e-60 234.2 220 52.3
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 9.6e-60 234.2 220 52.3
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 2.1e-59 233.0 220 51.8
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 2.1e-59 233.0 220 51.8
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 2.1e-59 233.0 219 52.1
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 4.8e-59 231.9 220 51.8
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 6.3e-59 231.5 218 51.8
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 6.3e-59 231.5 220 51.4
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 8.2e-59 231.1 219 52.5
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.1e-58 230.7 220 51.8
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 1.4e-58 230.3 220 51.4
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 1.4e-58 230.3 219 50.7
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 1.8e-58 229.9 220 51.8
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 2.4e-58 229.6 219 51.6
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 2.4e-58 229.6 219 51.6
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 3.1e-58 229.2 219 50.2
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 5.3e-58 228.4 219 50.2
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 6.9e-58 228.0 219 53.0
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.2e-57 227.3 219 50.7
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 1.5e-57 226.9 220 50.5
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 2.6e-57 226.1 230 50.0
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 2.6e-57 226.1 220 50.5
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 3.4e-57 225.7 220 50.9
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 3.4e-57 225.7 220 50.5
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 7.6e-57 224.6 216 48.6
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 7.6e-57 224.6 216 48.6
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 7.6e-57 224.6 217 51.6
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 1.3e-56 223.8 216 50.9
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.7e-56 223.4 220 51.4
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.2e-56 223.0 219 50.7
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 2.2e-56 223.0 214 51.9
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 5.0e-56 221.9 219 49.8
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 5.0e-56 221.9 216 48.6
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 6.5e-56 221.5 219 52.1
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 6.5e-56 221.5 219 51.1
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.1e-55 220.7 219 51.1
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 1.9e-55 219.9 226 47.8
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 9.3e-55 217.6 219 48.4
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.1e-54 216.5 219 47.9
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 3.6e-54 215.7 218 47.2
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 4.6e-54 215.3 241 46.5
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 6.1e-54 214.9 219 49.8
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 6.1e-54 214.9 219 49.8
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 1.3e-53 213.8 217 49.8
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 1.8e-53 213.4 219 47.5
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 2.3e-53 213.0 219 48.9
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 6.7e-53 211.5 219 47.0
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.1e-52 210.7 218 46.8
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.5e-52 210.3 220 46.8
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 1.9e-52 209.9 255 44.3
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 7.4e-52 208.0 218 45.4
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 7.4e-52 208.0 219 47.0
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 1.6e-51 206.8 219 46.1
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.8e-51 206.1 218 45.0
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 2.8e-51 206.1 219 45.2
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 3.7e-51 205.7 218 45.0
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 4.8e-51 205.3 219 47.0
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 2.4e-50 203.0 220 49.5
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 9.1e-50 201.1 130 66.9
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.5e-49 200.3 213 45.5
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 2.6e-49 199.5 186 52.2
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 4.5e-49 198.7 219 47.0
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 1.0e-48 197.6 219 44.7
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.1e-47 194.1 241 43.2
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.9e-47 193.4 127 67.7
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 7.2e-47 191.4 217 45.2
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.1e-46 189.9 126 64.3
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 4.6e-46 188.7 218 44.0
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 1.4e-45 187.2 219 42.0
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.8e-45 186.8 241 40.7
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 6.9e-42 174.9 218 40.8
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 9.1e-42 174.5 186 47.3
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 9.1e-42 174.5 217 41.0
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.2e-41 174.1 116 64.7
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.2e-38 164.1 225 36.9
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.1e-38 163.3 122 59.0
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 3.6e-38 162.5 218 39.9
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.3e-35 154.1 228 35.5
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.8e-34 150.2 219 39.7
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 2.4e-34 149.8 219 33.8
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 4.1e-34 149.1 216 38.0
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 7.0e-34 148.3 219 37.0
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.6e-33 147.1 117 59.8
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 3.5e-33 146.0 218 36.2
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 1.3e-32 144.1 229 36.7
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 3.2e-31 139.4 219 37.9
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 4.2e-31 139.0 217 35.5
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 1.6e-30 137.1 217 35.5
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 3.6e-30 136.0 150 48.0
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 6.1e-30 135.2 183 43.7
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 1.2e-28 131.0 149 47.0
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 1.2e-28 131.0 149 47.0
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 1.5e-28 130.6 125 44.8
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.3e-27 127.5 186 35.5
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.7e-27 127.1 185 35.7
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 2.2e-27 126.7 215 34.0
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.3e-26 122.1 188 35.6
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 9.1e-26 121.3 202 35.1
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.9e-25 118.6 183 34.4
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 2.5e-23 113.2 111 50.5
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 1.8e-21 107.1 235 30.2
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.8e-21 107.1 78 60.3
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.7e-19 100.5 122 40.2
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 2.8e-19 99.8 149 38.3
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 5.4e-18 95.5 116 44.8
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 2.0e-17 93.6 122 37.7
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 8.5e-16 88.2 65 58.5
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.2e-15 86.3 185 28.1
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.0e-14 81.6 64 51.6
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.0e-14 81.6 64 51.6
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.3e-13 80.1 65 50.8
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.6e-12 76.6 57 52.6
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.8e-12 74.7 64 48.4
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.3e-11 74.3 59 54.2
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.2e-11 73.6 64 46.9
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 2.8e-11 73.2 112 36.6
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.9e-11 72.4 57 50.9
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.8e-10 70.5 61 54.1
COL.COLO4_30599 Corchorus olitorius HOM05D004267 ORTHO05D044750 2.4e-10 70.1 142 31.0
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 1.3e-08 64.3 126 31.7
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 8.6e-08 61.6 217 22.1
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 3.3e-07 59.7 41 63.4
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 3.3e-07 59.7 39 61.5
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 2.1e-06 57.0 40 60.0


User provided reference genes

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