Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 0.0e+00 1275.8 836 100.0
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 3.3e-249 865.5 839 70.0
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.8e-74 285.0 868 37.9
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 3.1e-74 284.3 203 74.4
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.4e-66 258.8 252 64.7
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 2.0e-65 255.0 197 70.1
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 1.3e-64 252.3 248 58.5
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 1.3e-64 252.3 259 58.3
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.4e-63 248.8 252 58.3
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 4.2e-63 247.3 213 64.8
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.6e-62 245.4 227 63.0
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 3.6e-62 244.2 306 52.9
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 3.6e-62 244.2 242 59.9
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 4.6e-62 243.8 203 64.5
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 7.9e-62 243.0 227 64.3
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 2.3e-61 241.5 214 63.1
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 3.0e-61 241.1 206 65.0
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 8.8e-61 239.6 303 54.8
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 1.5e-60 238.8 218 62.8
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.6e-60 238.0 218 63.8
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 9.7e-60 236.1 201 66.7
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.1e-58 232.6 303 51.5
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.8e-58 231.9 219 62.1
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 4.1e-58 230.7 860 39.1
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 6.9e-58 229.9 337 52.8
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.7e-56 225.3 831 39.0
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.1e-55 222.6 213 62.9
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.7e-54 217.2 208 61.1
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.0e-53 216.1 206 61.2
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 1.0e-53 216.1 218 58.7
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 2.3e-53 214.9 206 60.7
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.2e-53 213.8 253 56.5
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 8.8e-53 213.0 886 36.9
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 2.0e-52 211.8 209 61.2
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.4e-52 210.7 253 56.1
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 5.7e-52 210.3 292 49.7
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 7.4e-52 209.9 252 56.7
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.7e-51 208.8 226 56.2
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.7e-51 208.8 226 56.2
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.2e-51 208.4 317 48.6
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.8e-51 208.0 197 61.4
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 3.7e-51 207.6 245 53.1
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 3.7e-51 207.6 168 69.0
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.1e-50 206.1 942 36.7
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.4e-50 205.7 226 55.3
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 2.4e-50 204.9 256 53.9
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 2.4e-50 204.9 256 52.7
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 5.3e-50 203.8 298 54.0
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 1.6e-49 202.2 249 54.6
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 1.6e-49 202.2 213 56.3
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 1.6e-49 202.2 163 68.1
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 4.5e-49 200.7 208 57.7
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 4.5e-49 200.7 259 53.7
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 5.9e-49 200.3 210 59.0
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 5.9e-49 200.3 210 59.0
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 5.9e-49 200.3 198 57.6
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 1.0e-48 199.5 145 73.1
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 3.8e-48 197.6 147 72.8
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 3.8e-48 197.6 142 75.4
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 5.0e-48 197.2 245 54.7
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 3.2e-47 194.5 256 50.0
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 7.2e-47 193.4 142 73.2
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 1.2e-46 192.6 302 49.0
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 2.3e-45 188.3 141 72.3
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 6.7e-45 186.8 211 57.3
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 6.7e-45 186.8 219 55.3
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 6.7e-45 186.8 895 41.5
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 6.7e-45 186.8 196 58.2
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 8.8e-45 186.4 142 70.4
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 8.8e-45 186.4 256 47.7
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 8.8e-45 186.4 256 47.7
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 1.2e-44 186.0 146 66.4
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 2.0e-44 185.3 248 51.6
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 2.6e-44 184.9 311 46.9
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 2.6e-44 184.9 141 70.9
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 3.3e-44 184.5 144 67.4
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.7e-43 182.2 152 67.1
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.7e-43 182.2 987 35.7
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 8.2e-43 179.9 745 35.7
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 3.1e-42 177.9 885 31.5
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.1e-42 177.9 152 65.8
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 5.3e-42 177.2 218 51.8
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 7.0e-42 176.8 169 60.9
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 3.5e-41 174.5 107 79.4
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 3.5e-41 174.5 105 81.0
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 2.9e-40 171.4 132 70.5
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 3.8e-40 171.0 105 79.0
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 8.5e-40 169.9 809 32.6
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.5e-39 169.1 113 78.8
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.5e-39 169.1 170 59.4
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 1.9e-39 168.7 109 78.0
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 2.5e-39 168.3 113 77.0
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.6e-38 165.6 182 53.8
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.7e-38 164.9 1036 36.9
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.7e-38 164.9 164 56.1
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 4.7e-38 164.1 870 39.8
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 4.7e-38 164.1 128 68.8
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.3e-37 161.8 105 76.2
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 3.0e-37 161.4 314 42.0
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 3.0e-37 161.4 107 80.4
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 4.0e-37 161.0 301 40.5
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 5.2e-37 160.6 182 50.5
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 3.4e-36 157.9 164 56.7
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 9.8e-36 156.4 174 52.3
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 9.8e-36 156.4 916 32.9
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.7e-35 155.6 226 46.9
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.1e-34 152.9 866 29.9
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 4.1e-34 151.0 773 31.2
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.0e-34 150.2 967 33.5
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 9.1e-34 149.8 118 66.9
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 2.7e-33 148.3 98 79.6
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 4.5e-33 147.5 883 34.9
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 2.2e-32 145.2 132 61.4
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.2e-32 145.2 92 77.2
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 6.5e-32 143.7 132 63.6
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 4.2e-31 141.0 267 39.3
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 5.5e-31 140.6 90 73.3
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.8e-29 135.6 716 33.7
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 2.3e-29 135.2 139 56.1
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 2.3e-29 135.2 181 47.5
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 6.8e-29 133.7 971 34.3
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.2e-28 132.9 80 81.2
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 9.8e-28 129.8 151 55.6
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 9.8e-28 129.8 151 55.6
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 4.9e-27 127.5 693 38.4
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 8.3e-27 126.7 111 59.5
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.8e-26 125.6 118 60.2
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.8e-26 125.6 114 58.8
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.6e-25 122.5 109 62.4
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.3e-24 119.4 109 60.6
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 2.3e-24 118.6 847 37.5
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 6.6e-24 117.1 105 60.0
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.9e-23 115.5 106 58.5
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 5.6e-23 114.0 102 58.8
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 7.3e-23 113.6 104 58.7
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 7.3e-23 113.6 104 58.7
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.2e-22 112.8 111 57.7
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.6e-22 112.5 157 45.2
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 2.1e-22 112.1 101 59.4
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 2.1e-22 112.1 106 57.5
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 2.8e-22 111.7 107 57.0
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 4.7e-22 110.9 814 34.2
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 8.0e-22 110.2 157 44.6
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.4e-21 109.4 172 49.4
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.4e-21 109.4 103 60.2
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.0e-21 108.2 192 43.2
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.9e-19 101.7 100 57.0
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 3.7e-19 101.3 107 56.1
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.0e-16 93.2 52 80.8
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.3e-16 92.8 109 49.5
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 5.0e-16 90.9 106 51.9
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 6.6e-16 90.5 101 45.5
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.8e-14 85.1 851 32.1
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 6.2e-14 84.0 162 34.6
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 2.3e-13 82.0 167 39.5
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 2.3e-13 82.0 93 46.2
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 1.2e-12 79.7 52 76.9
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 4.4e-12 77.8 60 73.3
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 2.2e-11 75.5 78 56.4
TAR626G1323 Trochodendron aralioides HOM05D004041 ORTHO05D004564 4.9e-11 74.3 134 41.8
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.6e-09 69.3 67 50.7
TAR626G1378 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.0e-08 66.6 217 32.3
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 2.3e-08 65.5 62 56.5
Cfa013242 Carpinus fangiana HOM05D063909 ORTHO05D004564 2.1e-06 58.9 640 30.2


User provided reference genes

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