Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 2.1e-307 1058.1 514 100.0
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 3.0e-269 931.4 514 89.9
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 7.6e-241 837.0 516 81.0
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 1.9e-236 822.4 513 78.8
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 1.9e-236 822.4 513 78.6
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 6.3e-235 817.4 513 78.2
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 9.0e-234 813.5 514 78.8
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 2.0e-233 812.4 514 78.8
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 4.5e-233 811.2 514 78.2
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 4.5e-233 811.2 513 78.2
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 7.7e-233 810.4 514 77.8
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 1.3e-232 809.7 513 78.4
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 2.2e-232 808.9 513 77.8
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 1.4e-231 806.2 514 77.6
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 9.4e-231 803.5 513 76.8
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 2.3e-229 798.9 514 77.2
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 3.9e-229 798.1 514 77.6
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 4.3e-228 794.7 515 77.1
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 5.7e-228 794.3 514 75.9
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 1.3e-227 793.1 515 76.7
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 1.7e-227 792.7 514 76.8
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.7e-227 791.6 514 76.1
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 4.8e-227 791.2 514 76.1
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 4.8e-227 791.2 514 76.1
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.1e-226 790.0 514 76.1
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.8e-226 789.3 514 75.7
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 1.8e-226 789.3 514 76.7
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 3.1e-226 788.5 515 76.5
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 3.1e-226 788.5 514 75.5
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 4.1e-226 788.1 515 76.3
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 6.9e-226 787.3 514 76.1
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 4.5e-225 784.6 514 76.1
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 4.5e-225 784.6 514 75.7
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 5.9e-225 784.3 514 75.9
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 1.0e-224 783.5 514 75.7
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 1.7e-224 782.7 514 76.3
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 2.9e-224 781.9 514 75.9
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 3.8e-224 781.6 514 75.1
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 3.8e-224 781.6 515 74.8
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 1.1e-223 780.0 515 75.5
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 1.9e-223 779.2 514 75.3
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 3.2e-223 778.5 521 74.7
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 4.2e-223 778.1 514 76.1
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 4.2e-223 778.1 514 76.1
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 7.2e-223 777.3 514 74.7
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 7.2e-223 777.3 512 75.2
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 1.2e-222 776.5 515 75.1
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 1.6e-222 776.2 514 75.3
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 1.6e-222 776.2 514 75.1
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 4.7e-222 774.6 514 75.7
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 4.7e-222 774.6 515 74.0
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 6.1e-222 774.2 521 74.5
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 7.9e-222 773.9 515 73.4
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 1.0e-221 773.5 514 74.5
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 2.3e-221 772.3 514 73.9
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 1.1e-220 770.0 514 75.3
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 1.5e-220 769.6 515 73.2
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 3.3e-220 768.5 516 73.6
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 4.4e-220 768.1 514 75.1
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 7.4e-220 767.3 516 74.0
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 7.4e-220 767.3 514 73.9
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 1.3e-219 766.5 512 75.0
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 2.8e-219 765.4 515 74.2
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 4.8e-219 764.6 515 73.8
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 6.3e-219 764.2 512 73.0
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 1.5e-217 759.6 519 74.8
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 1.3e-216 756.5 514 73.3
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 6.5e-216 754.2 513 72.1
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 8.5e-216 753.8 515 72.6
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 1.4e-215 753.1 516 73.4
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.5e-215 752.3 516 73.1
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 1.2e-214 750.0 514 73.9
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.6e-214 749.6 516 73.1
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 1.4e-213 746.5 515 72.8
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 1.8e-213 746.1 517 73.9
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 2.3e-213 745.7 516 71.9
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 6.7e-213 744.2 518 73.4
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 8.8e-213 743.8 516 73.1
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 3.3e-212 741.9 516 72.9
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 7.4e-212 740.7 518 72.4
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 4.8e-211 738.0 452 79.9
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 1.1e-210 736.9 514 72.4
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 1.8e-210 736.1 517 72.3
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 2.0e-209 732.6 517 73.1
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 2.0e-209 732.6 517 73.1
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 2.0e-209 732.6 514 71.4
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 1.0e-208 730.3 517 71.6
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 2.9e-208 728.8 516 71.5
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 3.2e-207 725.3 515 71.1
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 2.1e-206 722.6 514 71.6
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 3.0e-205 718.8 424 82.1
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 4.0e-205 718.4 427 81.5
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 5.2e-205 718.0 427 81.5
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 1.2e-204 716.8 517 71.2
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 4.4e-204 714.9 426 81.2
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 5.7e-204 714.5 513 71.2
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 9.7e-204 713.8 513 70.8
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 1.7e-203 713.0 515 71.1
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 2.5e-199 699.1 511 70.1
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 9.5e-191 670.6 481 71.5
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 9.8e-188 660.6 459 68.8
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 2.2e-187 659.4 424 74.5
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 2.0e-185 652.9 513 66.5
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 1.0e-184 650.6 449 70.4
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 3.9e-184 648.7 420 73.3
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 6.6e-184 647.9 455 69.2
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 6.4e-179 631.3 414 75.1
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 3.7e-171 605.5 423 68.6
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.2e-169 600.5 463 66.5
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 2.4e-162 576.2 420 64.0
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 4.6e-161 572.0 516 60.7
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 4.0e-157 558.9 426 61.0
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 1.3e-150 537.3 320 82.5
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 1.4e-149 533.9 320 82.2
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.6e-134 483.8 351 68.7
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.2e-132 477.6 265 83.0
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 6.3e-102 375.6 237 76.8
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.2e-97 361.3 217 77.4
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 5.0e-75 286.2 203 70.0
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 8.3e-62 242.3 196 62.8
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 3.0e-59 233.8 147 76.2
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 5.0e-59 233.0 130 83.1
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 7.3e-58 229.2 134 81.3
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 5.8e-47 193.0 169 61.5
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 1.9e-45 188.0 157 61.8
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 7.8e-36 156.0 94 79.8
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 2.7e-28 131.0 136 52.2
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 8.4e-14 82.8 59 66.1
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 1.6e-09 68.6 128 32.8
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 1.4e-08 65.5 151 29.1
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 2.0e-07 61.6 125 32.0
Pp3c14_11550 Physcomitrium patens HOM05D000776 ORTHO05D002281 2.0e-07 61.6 151 31.8
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 2.6e-07 61.2 125 32.0
Nn2g15146 Nelumbo nucifera HOM05D000776 ORTHO05D001624 5.9e-07 60.1 127 31.5
Haze_27503 Corylus avellana HOM05D000776 ORTHO05D002281 7.6e-07 59.7 160 31.2
HanXRQChr10g0316991 Helianthus annuus HOM05D000776 ORTHO05D001624 1.0e-06 59.3 129 29.5
PSO782G1764 Papaver somniferum HOM05D000776 ORTHO05D001624 1.0e-06 59.3 170 26.5
CiPaw.11G120200 Carya illinoinensis HOM05D000776 ORTHO05D001624 1.3e-06 58.9 128 28.9
Migut.E01129 Erythranthe guttata HOM05D000776 ORTHO05D001624 1.3e-06 58.9 150 27.3
PSO478G2983 Papaver somniferum HOM05D000776 ORTHO05D001624 1.3e-06 58.9 170 25.9
BraA01t02620Z Brassica rapa HOM05D000776 ORTHO05D001624 1.7e-06 58.5 152 23.7
FAN08G0150 Fragaria x ananassa HOM05D000776 ORTHO05D001624 2.2e-06 58.2 124 28.2
RcHm_v2.0_Chr7g0198901 Rosa chinensis HOM05D000776 ORTHO05D001624 3.8e-06 57.4 124 28.2
FAN18G4093 Fragaria x ananassa HOM05D000776 ORTHO05D001624 8.5e-06 56.2 124 28.2
Lalb_Chr12g0204371 Lupinus albus HOM05D000776 ORTHO05D002281 8.5e-06 56.2 169 28.4


User provided reference genes

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