Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 3.8e-185 651.4 332 100.0
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 5.6e-168 594.3 332 91.6
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 2.8e-111 406.0 348 64.9
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 2.5e-107 392.9 343 66.5
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 4.3e-104 382.1 350 62.6
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 4.3e-104 382.1 345 63.2
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.1e-102 377.5 343 61.2
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.6e-98 363.6 348 60.3
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 1.4e-97 360.5 343 60.1
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 8.8e-97 357.8 372 55.9
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.3e-96 355.9 347 59.4
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 3.3e-96 355.9 343 60.1
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 3.3e-96 355.9 343 60.3
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.1e-94 350.9 321 61.1
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.4e-94 350.5 340 59.1
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 5.3e-94 348.6 345 58.8
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 5.3e-94 348.6 351 57.5
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 6.9e-94 348.2 310 61.9
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 9.1e-94 347.8 330 60.0
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 9.1e-94 347.8 333 60.1
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.2e-93 347.4 267 68.2
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.2e-93 347.4 350 59.4
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 2.6e-93 346.3 329 59.9
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 2.6e-93 346.3 329 59.9
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 4.5e-93 345.5 332 59.3
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.7e-92 343.6 331 58.9
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.7e-92 343.6 331 58.9
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.7e-92 343.6 347 57.3
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 2.9e-92 342.8 353 57.5
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 5.0e-92 342.0 348 56.0
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 6.5e-92 341.7 348 57.5
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 8.5e-92 341.3 347 59.1
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 7.2e-91 338.2 333 59.5
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.6e-90 337.0 333 58.6
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 1.0e-89 334.3 336 57.1
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.9e-89 332.4 338 58.3
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 5.2e-89 332.0 333 58.0
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 1.5e-88 330.5 340 56.5
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.1e-86 324.3 339 56.0
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.4e-86 323.9 215 74.0
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 1.8e-86 323.6 332 56.6
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 1.2e-85 320.9 344 55.2
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 1.6e-85 320.5 341 54.5
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 8.5e-84 314.7 322 55.3
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 2.1e-82 310.1 344 54.1
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 1.0e-81 307.8 238 63.9
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 1.4e-81 307.4 334 55.4
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.8e-81 307.0 341 51.6
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 3.0e-81 306.2 346 54.0
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 5.2e-81 305.4 387 48.8
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 1.5e-80 303.9 334 52.4
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 1.5e-80 303.9 346 52.3
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 2.6e-80 303.1 324 52.2
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 5.7e-80 302.0 349 51.0
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 9.7e-80 301.2 339 52.8
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 1.3e-79 300.8 337 52.5
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 3.7e-79 299.3 282 59.2
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 4.8e-79 298.9 306 54.9
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 6.3e-79 298.5 314 54.5
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 8.2e-79 298.1 348 53.4
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 1.4e-78 297.4 339 50.4
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.4e-78 297.4 374 49.2
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 3.1e-78 296.2 335 51.3
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 7.0e-78 295.0 347 50.1
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 1.2e-77 294.3 257 61.9
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.2e-77 294.3 233 63.1
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 1.0e-76 291.2 315 51.7
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.7e-76 290.4 302 56.3
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 3.8e-76 289.3 332 51.8
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 4.2e-75 285.8 300 54.0
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 4.2e-75 285.8 300 54.0
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 4.2e-75 285.8 372 47.6
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 7.2e-75 285.0 200 69.0
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 2.1e-74 283.5 327 52.0
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 6.3e-71 271.9 354 47.7
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 8.3e-71 271.6 332 48.8
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.8e-70 270.4 337 49.0
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.0e-69 266.9 343 49.6
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 3.5e-69 266.2 201 65.7
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 2.3e-68 263.5 276 55.4
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 3.8e-68 262.7 255 57.3
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 3.8e-68 262.7 211 67.3
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 4.7e-66 255.8 199 62.3
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 4.0e-65 252.7 213 60.6
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 8.3e-63 245.0 239 56.1
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 3.1e-62 243.0 232 53.0
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.2e-61 241.1 338 45.9
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.5e-61 239.6 336 49.1
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.5e-61 239.6 338 45.9
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.3e-59 233.0 235 48.9
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 7.3e-59 231.9 239 53.6
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 9.5e-59 231.5 239 53.1
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 8.0e-58 228.4 216 58.8
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 4.0e-57 226.1 201 55.7
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.2e-56 224.6 319 44.8
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 3.4e-56 223.0 226 50.9
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 9.2e-54 214.9 207 57.5
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.7e-52 210.7 264 45.8
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 5.0e-52 209.1 203 51.2
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 9.5e-51 204.9 199 55.8
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.2e-50 204.5 290 40.7
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 2.1e-50 203.8 305 41.3
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 3.6e-50 203.0 336 40.2
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.3e-49 200.3 132 76.5
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 6.8e-49 198.7 261 45.6
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 1.7e-47 194.1 289 40.8
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-46 191.4 130 73.1
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.6e-45 187.6 329 41.6
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 2.7e-45 186.8 227 45.8
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 7.8e-45 185.3 218 47.7
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 7.8e-45 185.3 243 45.3
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 1.3e-44 184.5 350 37.1
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 5.0e-44 182.6 159 58.5
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 6.6e-44 182.2 355 39.7
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 5.6e-43 179.1 304 40.8
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 2.8e-42 176.8 241 44.4
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 3.6e-42 176.4 196 48.5
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.1e-41 174.9 245 42.4
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 3.1e-41 173.3 137 65.0
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.2e-39 167.2 240 42.5
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 2.9e-39 166.8 196 49.5
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.9e-38 164.1 326 37.7
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.9e-38 164.1 171 54.4
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 3.2e-38 163.3 271 37.6
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 1.3e-36 157.9 305 35.4
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 1.7e-36 157.5 325 36.6
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 3.9e-36 156.4 222 38.3
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 5.6e-35 152.5 163 52.1
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 7.3e-35 152.1 294 37.1
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 7.3e-35 152.1 354 33.9
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.8e-34 150.2 329 35.6
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 5.2e-33 146.0 101 69.3
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.2e-32 144.8 121 61.2
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 7.1e-30 135.6 209 44.0
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 2.7e-29 133.7 93 68.8
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 6.6e-28 129.0 118 56.8
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 1.5e-27 127.9 76 82.9
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 4.0e-25 119.8 217 41.0
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.3e-23 114.8 74 71.6
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.3e-23 114.8 102 51.0
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 8.7e-20 102.1 71 67.6
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 5.6e-19 99.4 146 39.7
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 1.4e-17 94.7 173 37.6
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 1.5e-16 91.3 87 59.8
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 2.0e-16 90.9 73 65.8
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 7.9e-13 79.0 96 45.8
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.4e-08 63.5 43 67.4
PRCOL_00000970 Prasinoderma coloniale HOM05D049057 ORTHO05D049180 2.2e-07 60.8 157 30.6


User provided reference genes

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