Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 0.0e+00 1715.3 1102 100.0
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 0.0e+00 1342.4 1105 85.6
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 0.0e+00 1216.4 1099 76.4
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 0.0e+00 1203.7 1103 76.0
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 4.2e-289 998.4 1111 70.7
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 5.5e-289 998.0 1115 70.3
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 2.3e-271 939.5 1109 69.4
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.9e-268 929.9 1109 64.3
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 3.1e-263 912.5 1106 65.3
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 2.7e-251 872.8 1107 65.2
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.9e-250 869.0 1113 65.8
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 9.6e-249 864.4 1119 66.4
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 1.6e-248 863.6 991 68.2
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.7e-245 853.6 1108 61.1
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 5.1e-242 842.0 1108 65.7
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 5.6e-241 838.6 1146 59.3
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 5.6e-241 838.6 1108 65.1
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.1e-239 832.8 1113 58.5
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.4e-236 823.9 1103 64.0
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 1.9e-236 823.5 1103 64.0
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.7e-232 809.3 1101 63.7
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 4.8e-232 808.9 1112 64.0
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 4.8e-232 808.9 1110 63.3
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.8e-232 808.9 961 67.2
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.9e-228 797.0 1117 62.0
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.5e-228 796.6 961 61.5
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 9.3e-228 794.7 988 67.9
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 2.1e-227 793.5 1100 63.8
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.3e-226 790.8 1113 58.0
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.8e-226 790.4 1109 62.1
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 9.6e-225 784.6 987 67.4
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 3.7e-224 782.7 1085 63.9
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.1e-223 779.6 958 69.3
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 6.9e-223 778.5 1128 60.5
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 6.9e-223 778.5 958 69.2
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.5e-222 777.3 1106 60.9
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 3.4e-222 776.2 1121 60.8
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 3.4e-222 776.2 998 66.9
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.7e-221 773.9 1125 61.9
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.4e-220 770.8 1107 60.6
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 3.2e-220 769.6 953 68.5
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 4.6e-219 765.8 960 68.1
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.0e-218 764.6 1110 57.3
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.9e-218 762.7 972 66.4
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 5.1e-218 762.3 1108 60.8
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.9e-217 760.4 1103 60.1
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 5.7e-217 758.8 956 65.8
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 7.4e-217 758.4 1126 55.6
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 4.8e-216 755.7 893 71.4
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 2.4e-215 753.4 1101 60.1
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 6.9e-215 751.9 1000 61.2
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 2.0e-214 750.4 980 66.7
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.0e-214 750.4 942 66.1
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.3e-213 747.7 891 70.4
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.9e-212 743.8 1004 64.4
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 2.5e-212 743.4 987 65.2
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 2.5e-212 743.4 980 58.6
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.2e-211 741.1 1047 62.9
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 1.8e-210 737.3 958 66.4
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 4.3e-209 732.6 960 64.1
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.8e-208 729.2 1110 58.5
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 9.1e-207 724.9 1104 61.1
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 1.0e-205 721.5 1108 59.3
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.3e-205 721.1 931 68.6
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 5.5e-204 715.7 1108 60.5
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 5.5e-204 715.7 1106 52.4
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 1.2e-203 714.5 1056 61.6
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.2e-203 714.5 1026 61.8
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.1e-203 713.8 1104 59.8
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 7.9e-203 711.8 1106 52.4
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 7.9e-203 711.8 959 64.4
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.0e-202 711.4 947 63.8
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 5.1e-202 709.1 1012 62.8
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 2.6e-201 706.8 979 64.2
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 2.6e-201 706.8 878 69.1
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 2.6e-201 706.8 977 62.3
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 7.4e-201 705.3 1107 58.7
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 4.8e-200 702.6 899 65.7
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 8.2e-200 701.8 958 66.3
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 1.1e-199 701.4 1112 52.2
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.4e-199 701.0 978 62.1
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 7.0e-199 698.7 977 62.2
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 5.9e-198 695.7 1015 59.8
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 5.9e-198 695.7 1111 57.4
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.3e-197 694.5 1103 56.8
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 2.2e-197 693.7 957 62.0
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 7.2e-196 688.7 957 62.1
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 7.2e-196 688.7 1108 57.2
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.1e-195 687.2 869 65.5
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 6.1e-195 685.6 882 66.9
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 2.6e-193 680.2 1107 57.2
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 4.1e-191 672.9 975 60.2
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 9.1e-191 671.8 972 61.7
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 4.5e-190 669.5 939 60.6
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.3e-189 667.9 1065 56.9
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 6.5e-189 665.6 1106 57.9
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 2.5e-188 663.7 893 58.0
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 3.6e-187 659.8 993 58.4
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 8.0e-187 658.7 919 63.7
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 8.0e-187 658.7 1078 49.5
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.0e-186 658.3 1100 56.4
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 2.3e-186 657.1 980 57.0
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 1.7e-184 651.0 1098 56.3
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 2.8e-184 650.2 1097 55.9
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 3.7e-184 649.8 919 65.3
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.8e-183 647.5 987 59.9
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 2.4e-183 647.1 987 59.8
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 9.1e-183 645.2 982 61.5
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 1.2e-182 644.8 1094 56.2
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.6e-182 644.4 999 59.2
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.5e-180 637.9 988 59.3
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 9.4e-180 635.2 993 59.0
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 3.6e-179 633.3 1099 55.1
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 7.5e-177 625.5 1116 53.9
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.8e-176 623.6 931 62.5
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.8e-175 620.9 1096 52.1
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 6.6e-173 612.5 912 53.8
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.5e-169 601.3 974 60.0
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.4e-169 600.1 955 58.2
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 7.5e-169 599.0 883 62.3
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 2.0e-166 590.9 858 60.5
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 3.0e-165 587.0 947 54.6
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 1.5e-164 584.7 890 55.5
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 5.6e-164 582.8 959 53.2
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 9.5e-164 582.0 985 54.0
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 2.1e-163 580.9 959 52.9
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 2.1e-163 580.9 959 52.9
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 2.6e-161 573.9 871 57.1
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.0e-158 564.3 962 56.0
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 1.1e-154 552.0 754 69.5
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 9.8e-153 545.4 984 56.9
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.7e-152 544.7 806 57.3
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.9e-151 541.2 983 56.0
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 7.1e-151 539.3 754 61.5
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 6.6e-149 532.7 1028 49.7
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 1.5e-148 531.6 959 52.0
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.5e-148 531.6 1028 52.0
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.9e-148 531.2 964 51.2
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 2.3e-146 524.2 952 50.9
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 2.3e-146 524.2 952 51.3
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 4.7e-139 500.0 964 50.0
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 8.7e-133 479.2 817 56.4
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.6e-131 474.9 846 46.2
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 9.9e-129 465.7 717 62.2
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.6e-123 448.4 1047 45.1
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.6e-123 447.2 981 44.3
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 5.8e-121 439.9 994 45.0
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 4.6e-118 430.3 866 47.7
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.7e-115 420.6 758 52.9
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 9.3e-111 406.0 978 45.2
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 8.7e-109 399.4 505 70.3
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.8e-106 391.7 987 48.1
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 4.6e-102 377.1 975 33.7
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-100 372.5 1299 30.4
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.5e-97 360.5 415 61.7
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.2e-94 352.4 710 62.4
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 2.8e-91 341.3 493 49.3
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 4.8e-91 340.5 1013 43.7
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 7.9e-86 323.2 811 44.8
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 6.3e-83 313.5 485 48.5
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 4.5e-81 307.4 663 54.1
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 6.5e-80 303.5 715 48.5
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 3.8e-72 277.7 272 65.8
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 2.6e-68 265.0 314 80.9
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 3.0e-61 241.5 152 78.3
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 3.4e-52 211.5 232 51.7
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.8e-44 184.1 312 41.7
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 8.6e-40 170.2 125 68.8
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.3e-39 167.9 351 38.7
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.0e-32 146.7 89 77.5
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.3e-32 146.4 119 63.0
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 6.6e-32 144.1 88 83.0
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.1e-21 110.2 167 46.1
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 9.6e-15 87.0 194 34.0
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 9.0e-13 80.5 62 59.7
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 7.1e-10 70.9 230 71.7
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 4.8e-06 58.2 206 28.2


User provided reference genes

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