Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 5.3e-63 244.2 125 100.0
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 5.7e-57 224.2 125 91.2
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 1.6e-35 152.9 111 72.1
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 3.6e-35 151.8 110 70.0
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 4.7e-35 151.4 111 72.1
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 1.8e-34 149.4 111 71.2
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 1.8e-34 149.4 103 71.8
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 5.2e-34 147.9 111 70.3
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 8.9e-34 147.1 102 71.6
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 3.4e-33 145.2 112 70.5
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 4.9e-32 141.4 110 67.3
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 4.9e-32 141.4 110 65.5
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 8.3e-32 140.6 105 68.6
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 1.4e-31 139.8 101 69.3
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 1.8e-31 139.4 108 65.7
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 5.4e-31 137.9 103 68.0
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 3.5e-30 135.2 103 67.0
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 1.0e-29 133.7 108 66.7
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 2.3e-29 132.5 106 63.2
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 5.0e-29 131.3 98 66.3
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 1.9e-28 129.4 100 68.0
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 2.5e-28 129.0 100 66.0
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 3.3e-28 128.6 108 63.9
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 5.6e-28 127.9 103 66.0
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 1.2e-27 126.7 110 59.1
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.2e-27 126.7 107 64.5
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 2.8e-27 125.6 110 57.3
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 3.6e-27 125.2 110 59.1
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 8.0e-27 124.0 110 58.2
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 1.0e-26 123.6 110 59.1
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 1.8e-26 122.9 103 65.0
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 1.8e-26 122.9 110 59.1
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 2.3e-26 122.5 103 60.2
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 3.0e-26 122.1 93 61.3
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 4.0e-26 121.7 110 59.1
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 5.2e-26 121.3 93 61.3
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 8.9e-26 120.6 110 59.1
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 8.9e-26 120.6 93 61.3
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 8.9e-26 120.6 93 61.3
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 8.9e-26 120.6 93 61.3
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 2.6e-25 119.0 93 60.2
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 3.4e-25 118.6 100 59.0
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 3.4e-25 118.6 104 59.6
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 5.8e-25 117.9 92 60.9
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 7.5e-25 117.5 101 56.4
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.3e-24 116.7 101 60.4
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 1.3e-24 116.7 101 60.4
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 1.7e-24 116.3 100 63.0
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 3.7e-24 115.2 102 60.8
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 6.4e-24 114.4 101 58.4
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 6.4e-24 114.4 102 62.7
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 1.1e-23 113.6 100 63.0
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 2.4e-23 112.5 90 63.3
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 3.2e-23 112.1 103 57.3
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 4.1e-23 111.7 101 52.5
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.2e-23 110.5 99 57.6
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 9.2e-23 110.5 104 55.8
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 2.0e-22 109.4 112 53.6
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 2.0e-22 109.4 104 53.8
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 3.5e-22 108.6 104 51.9
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 4.6e-22 108.2 112 55.4
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 6.0e-22 107.8 106 56.6
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 1.7e-21 106.3 107 52.3
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 2.3e-21 105.9 89 62.9
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 3.0e-21 105.5 93 52.7
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 3.9e-21 105.1 105 55.2
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 3.9e-21 105.1 98 52.0
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 3.3e-20 102.1 102 52.9
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 7.3e-20 100.9 108 50.9
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 9.5e-20 100.5 102 51.0
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 9.5e-20 100.5 103 50.5
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 1.6e-19 99.8 101 50.5
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 1.6e-19 99.8 109 50.5
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 3.6e-19 98.6 105 48.6
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 3.6e-19 98.6 105 48.6
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 4.7e-19 98.2 102 49.0
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 4.7e-19 98.2 102 49.0
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 8.0e-19 97.4 102 49.0
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 1.1e-18 97.1 107 47.7
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 3.1e-18 95.5 110 49.1
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 3.1e-18 95.5 97 48.5
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 5.2e-18 94.7 100 50.0
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 8.9e-18 94.0 93 53.8
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 1.2e-17 93.6 77 63.6
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 2.6e-17 92.4 104 50.0
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 5.8e-17 91.3 101 50.5
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 2.2e-16 89.4 152 40.1
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 2.9e-16 89.0 104 50.0
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 1.1e-15 87.0 100 46.0
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 1.9e-15 86.3 103 48.5
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 1.9e-15 86.3 111 46.8
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 2.4e-15 85.9 102 44.1
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 5.4e-15 84.7 111 46.8
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 1.3e-13 80.1 79 53.2
TAR624G1426 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.3e-13 80.1 66 63.6
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 1.1e-12 77.0 99 41.4
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 1.2e-11 73.6 77 51.9
BcaB01g04756 Brassica carinata HOM05D007692 ORTHO05D009696 2.9e-08 62.4 41 63.4
Sed0007062 Sechium edule HOM05D007692 ORTHO05D009696 8.3e-08 60.8 52 57.7


User provided reference genes

Program Settings