Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 0.0e+00 1116.7 570 100.0
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 7.6e-274 946.8 572 86.7
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 1.7e-225 786.2 573 72.8
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 2.5e-224 782.3 563 73.4
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 5.0e-209 731.5 564 68.8
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 8.3e-204 714.1 561 69.0
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 5.9e-202 708.0 568 65.8
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 3.8e-201 705.3 564 66.7
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 2.5e-200 702.6 573 67.5
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 3.3e-200 702.2 570 65.8
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 4.3e-200 701.8 592 64.0
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 9.5e-200 700.7 565 65.8
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 2.1e-199 699.5 564 67.2
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 6.1e-199 698.0 563 64.1
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 1.4e-198 696.8 561 66.3
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 2.0e-197 693.0 567 65.6
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 2.2e-196 689.5 578 64.4
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 3.7e-196 688.7 594 63.0
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.4e-195 686.8 583 63.8
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 2.4e-195 686.0 573 64.7
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 3.5e-194 682.2 563 63.9
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 1.7e-188 663.3 565 63.5
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 8.3e-188 661.0 565 64.1
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.4e-187 659.4 569 62.7
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 9.2e-187 657.5 569 62.7
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.7e-186 656.0 530 65.8
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.7e-186 656.0 565 61.2
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.6e-186 655.2 569 62.4
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 6.6e-185 651.4 568 63.4
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 1.6e-183 646.7 568 63.2
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 1.6e-183 646.7 464 71.3
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 2.6e-181 639.4 572 61.2
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 2.6e-181 639.4 565 63.7
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 3.7e-180 635.6 556 60.8
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 1.9e-179 633.3 533 64.0
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 2.1e-178 629.8 574 60.1
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 2.7e-178 629.4 565 60.5
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 5.1e-177 625.2 575 60.2
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 2.8e-175 619.4 565 60.2
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 4.7e-175 618.6 566 61.7
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 1.4e-174 617.1 565 60.5
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 1.2e-173 614.0 555 61.4
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 3.7e-172 609.0 577 59.1
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 3.2e-171 605.9 565 60.2
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 1.2e-170 604.0 579 58.7
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 1.2e-170 604.0 579 58.9
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 1.2e-170 604.0 609 55.7
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 2.7e-170 602.8 532 63.5
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 3.5e-170 602.4 530 62.6
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 2.3e-169 599.7 447 68.2
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.9e-168 596.7 560 59.1
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 2.5e-168 596.3 590 57.5
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 3.6e-167 592.4 571 57.3
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 3.6e-167 592.4 567 58.0
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 6.2e-167 591.7 577 57.2
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 1.7e-164 583.6 564 58.9
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 5.4e-163 578.6 569 55.2
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 5.4e-163 578.6 532 61.5
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 3.5e-162 575.9 565 55.8
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 6.0e-162 575.1 565 55.6
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 5.1e-161 572.0 413 69.7
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 6.6e-161 571.6 571 55.3
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 4.3e-160 568.9 572 55.1
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.0e-158 562.4 556 56.3
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 2.2e-156 556.6 447 64.2
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 4.6e-154 548.9 612 54.1
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 8.1e-151 538.1 571 54.1
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 4.5e-149 532.3 401 68.6
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 1.9e-147 526.9 516 57.9
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 2.1e-146 523.5 574 49.7
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 6.0e-146 521.9 561 53.8
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 5.1e-145 518.8 572 51.4
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 7.4e-144 515.0 529 55.0
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.3e-143 514.2 561 53.5
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 1.4e-142 510.8 573 52.4
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 5.8e-141 505.4 560 51.8
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 1.3e-140 504.2 562 51.2
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 1.0e-137 494.6 567 50.8
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.8e-137 493.8 434 59.4
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 4.3e-136 489.2 566 49.5
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 2.1e-135 486.9 584 49.3
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 4.8e-135 485.7 569 52.2
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 1.8e-134 483.8 568 51.4
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 1.8e-134 483.8 568 51.4
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 1.2e-133 481.1 564 49.8
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.2e-133 481.1 527 52.6
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 4.5e-133 479.2 572 50.9
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 7.6e-133 478.4 344 70.3
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 2.5e-131 473.4 572 50.7
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 2.5e-131 473.4 572 50.7
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 6.1e-130 468.8 452 57.1
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 8.7e-129 464.9 469 57.4
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.9e-128 463.8 567 47.1
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 9.7e-128 461.5 592 47.0
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.3e-127 461.1 469 53.9
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 2.2e-127 460.3 570 48.2
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 6.1e-122 442.2 524 48.1
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 8.8e-121 438.3 414 57.0
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 4.1e-118 429.5 500 49.6
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 2.6e-117 426.8 559 45.4
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 2.9e-116 423.3 413 53.8
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.9e-115 420.6 569 45.5
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 8.2e-111 405.2 590 43.6
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 1.8e-110 404.1 430 50.9
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 5.3e-110 402.5 492 48.6
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 8.5e-108 395.2 534 46.1
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 1.1e-107 394.8 437 52.6
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 5.5e-107 392.5 565 44.1
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.7e-100 370.9 263 73.0
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 5.5e-99 365.9 491 45.2
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 4.7e-98 362.8 465 48.0
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 5.2e-97 359.4 540 40.4
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 8.8e-97 358.6 415 48.9
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 7.5e-96 355.5 224 79.9
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 2.0e-88 330.9 531 39.5
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.7e-87 327.8 368 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 1.8e-86 324.3 515 37.9
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 2.9e-84 317.0 291 54.6
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 3.4e-80 303.5 368 45.9
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 4.9e-79 299.7 374 46.3
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 4.6e-77 293.1 576 35.4
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.7e-76 291.2 541 39.4
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 5.2e-65 253.1 383 42.3
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 1.1e-62 245.4 334 45.2
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 7.3e-51 206.1 197 55.8
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 1.3e-47 195.3 322 37.9
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 8.4e-47 192.6 149 66.4
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 6.4e-31 139.8 223 36.8
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 1.4e-30 138.7 97 71.1
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 3.8e-23 114.0 152 51.3
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 4.9e-23 113.6 71 81.7
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 2.5e-22 111.3 73 72.6
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 7.1e-22 109.8 179 35.8
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 3.9e-20 104.0 69 73.9
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 1.5e-19 102.1 194 34.0
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 9.7e-19 99.4 68 72.1
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 4.8e-18 97.1 91 61.5
QL02p017308 Quercus lobata HOM05D005024 ORTHO05D006396 1.1e-17 95.9 74 62.2
Gohir.A01G114950 Gossypium hirsutum HOM05D005024 ORTHO05D029835 4.3e-11 73.9 85 44.7
Gohir.A01G201250 Gossypium hirsutum HOM05D005024 ORTHO05D029835 4.3e-11 73.9 85 44.7
Gorai.003G122400 Gossypium raimondii HOM05D005024 ORTHO05D029835 4.3e-11 73.9 85 44.7
Gohir.D07G161533 Gossypium hirsutum HOM05D005024 ORTHO05D029835 2.8e-10 71.2 85 43.5
Gohir.D07G167350 Gossypium hirsutum HOM05D005024 ORTHO05D006396 8.2e-10 69.7 88 42.0


User provided reference genes

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