Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 1.2e-142 510.0 283 100.0
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.0e-117 427.2 283 86.2
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 8.0e-83 311.2 246 77.2
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 7.3e-60 235.0 287 57.8
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 3.1e-58 229.6 284 54.9
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 3.2e-47 193.0 268 53.4
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 2.3e-45 186.8 285 48.4
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 1.9e-44 183.7 278 52.2
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 3.1e-42 176.4 294 46.9
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.6e-41 173.3 273 47.6
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 4.5e-41 172.6 279 48.0
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.2e-40 170.2 263 47.5
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 6.4e-40 168.7 277 46.6
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 9.3e-39 164.9 283 45.2
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.2e-38 164.5 329 40.4
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 6.0e-38 162.2 280 47.5
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 6.7e-37 158.7 288 45.8
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 6.2e-35 152.1 283 43.1
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.1e-34 151.4 288 44.4
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 2.0e-33 147.1 297 41.8
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.0e-33 147.1 288 43.8
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 5.8e-33 145.6 295 42.0
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.3e-32 144.4 272 45.6
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.4e-31 140.2 269 42.4
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 7.1e-31 138.7 283 41.3
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 9.3e-31 138.3 272 42.3
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.5e-30 136.3 298 39.3
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.8e-29 134.0 271 41.0
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.9e-29 132.9 272 41.2
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 1.1e-28 131.3 278 40.6
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 5.6e-28 129.0 298 39.6
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 8.2e-27 125.2 290 40.0
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 8.2e-27 125.2 305 40.7
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 9.0e-26 121.7 276 42.8
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.2e-25 121.3 267 41.9
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 2.0e-25 120.6 280 39.6
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 4.5e-25 119.4 292 40.4
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.9e-24 116.7 122 59.8
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 4.9e-24 115.9 279 39.8
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 8.4e-24 115.2 255 39.2
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 1.9e-23 114.0 278 40.6
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 1.2e-22 111.3 299 36.8
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 2.1e-22 110.5 268 39.2
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 7.9e-22 108.6 272 37.5
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 1.0e-21 108.2 282 37.2
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 1.0e-21 108.2 260 40.8
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 3.0e-21 106.7 268 40.7
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 5.1e-21 105.9 313 38.3
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 6.7e-21 105.5 302 34.8
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 8.7e-21 105.1 279 38.0
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.1e-20 104.8 226 42.9
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 1.1e-20 104.8 260 40.0
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 3.3e-20 103.2 159 50.9
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 4.3e-20 102.8 284 37.3
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 4.3e-20 102.8 270 39.3
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 7.4e-20 102.1 200 45.5
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 1.6e-19 100.9 290 36.6
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 2.8e-19 100.1 282 33.7
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 3.7e-19 99.8 259 37.1
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 6.3e-19 99.0 279 36.9
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 6.3e-19 99.0 149 50.3
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 1.1e-18 98.2 321 35.8
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 1.1e-18 98.2 184 44.6
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 2.4e-18 97.1 256 37.9
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 5.3e-18 95.9 152 48.0
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 6.9e-18 95.5 283 35.0
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 2.0e-17 94.0 120 52.5
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 3.4e-17 93.2 267 37.5
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 5.9e-17 92.4 290 33.4
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 1.7e-16 90.9 291 33.3
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 1.7e-16 90.9 269 34.6
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 5.0e-16 89.4 165 44.2
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 6.5e-16 89.0 163 48.5
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 1.9e-15 87.4 239 39.7
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 1.9e-15 87.4 186 45.2
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 5.5e-15 85.9 261 34.9
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 9.4e-15 85.1 149 43.0
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.6e-14 83.2 281 32.7
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 4.6e-14 82.8 275 33.5
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 6.1e-14 82.4 284 31.3
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 1.4e-13 81.3 318 29.6
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.8e-13 80.9 284 32.4
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.0e-13 80.1 284 32.0
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 3.0e-13 80.1 295 33.6
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 3.0e-13 80.1 172 39.5
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 5.1e-13 79.3 271 34.3
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 5.1e-13 79.3 105 49.5
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 6.7e-13 79.0 226 38.5
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 8.8e-13 78.6 273 33.7
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 1.1e-12 78.2 288 33.3
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 1.1e-12 78.2 125 48.0
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 1.5e-12 77.8 282 33.0
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 2.0e-12 77.4 166 41.6
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 2.0e-12 77.4 166 41.6
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 2.5e-12 77.0 159 41.5
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 2.5e-12 77.0 120 45.8
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 2.5e-12 77.0 125 48.0
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 3.3e-12 76.6 169 35.5
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 9.7e-12 75.1 100 51.0
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 1.7e-11 74.3 266 33.1
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 1.7e-11 74.3 209 38.3
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 1.7e-11 74.3 146 42.5
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 2.2e-11 73.9 162 43.2
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 2.8e-11 73.6 77 58.4
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 2.8e-11 73.6 265 32.8
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 2.8e-11 73.6 227 39.2
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 3.7e-11 73.2 271 33.6
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 4.8e-11 72.8 269 32.3
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 8.2e-11 72.0 199 38.2
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 8.2e-11 72.0 189 40.7
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.1e-10 71.6 73 57.5
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 1.1e-10 71.6 73 57.5
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.1e-10 71.6 185 37.3
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 1.4e-10 71.2 154 39.6
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 4.1e-10 69.7 165 38.2
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 4.1e-10 69.7 73 58.9
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 1.5e-09 67.8 69 58.0
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 2.0e-09 67.4 58 65.5
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 2.6e-09 67.0 201 35.3
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 3.4e-09 66.6 58 63.8
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 3.4e-09 66.6 318 30.8
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 4.5e-09 66.2 280 28.6
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 4.5e-09 66.2 201 35.3
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 5.9e-09 65.9 171 39.8
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 1.3e-08 64.7 252 32.1
PGSC0003DMG400002023 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.3e-08 64.7 75 49.3
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.7e-08 64.3 288 31.2
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 1.7e-08 64.3 83 55.4
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 2.9e-08 63.5 190 37.4
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 2.9e-08 63.5 227 33.9
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 2.9e-08 63.5 271 29.9
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 5.0e-08 62.8 78 53.8
PGSC0003DMG400018718 Solanum tuberosum HOM05D004973 ORTHO05D006119 8.5e-08 62.0 79 46.8
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 3.2e-07 60.1 79 46.8
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 4.2e-07 59.7 237 30.4
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 9.4e-07 58.5 79 45.6


User provided reference genes

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