Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 0.0e+00 1709.9 871 100.0
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 0.0e+00 1424.8 833 88.1
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 0.0e+00 1422.9 833 87.9
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 0.0e+00 1291.6 915 76.0
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 0.0e+00 1084.7 889 65.2
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 0.0e+00 1082.4 844 67.4
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 0.0e+00 1078.9 853 67.5
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 6.0e-312 1074.7 869 65.9
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 4.2e-311 1071.2 858 66.8
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 3.7e-304 1048.1 853 64.7
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.4e-303 1046.2 853 65.7
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 2.5e-300 1035.4 853 64.7
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 4.2e-300 1034.6 853 64.6
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.8e-298 1029.2 853 62.7
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.5e-297 1026.2 853 63.9
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 3.1e-295 1018.5 854 63.5
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 2.7e-294 1015.4 853 62.0
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 4.0e-290 1001.5 853 63.0
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.8e-288 995.3 855 61.1
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.1e-287 993.4 879 62.5
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.4e-287 993.0 854 61.0
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.3e-285 985.7 859 62.9
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 6.6e-285 984.2 858 62.9
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 5.2e-282 974.5 857 62.4
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 9.8e-281 970.3 855 60.2
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 3.7e-280 968.4 735 69.1
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.3e-280 967.6 855 59.9
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 8.3e-280 967.2 761 67.5
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 9.5e-276 953.7 860 60.6
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 3.1e-274 948.7 877 60.2
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.2e-273 946.8 875 58.2
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 6.4e-272 941.0 893 58.1
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 7.0e-271 937.6 935 55.8
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 7.8e-270 934.1 873 59.6
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.3e-269 933.3 937 57.7
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 2.3e-269 932.6 890 59.0
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 3.0e-269 932.2 863 57.9
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 1.1e-268 930.2 807 59.6
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 5.2e-266 921.4 851 60.6
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 3.4e-265 918.7 857 58.0
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 3.2e-263 912.1 878 56.9
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 7.0e-263 911.0 857 57.9
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 2.1e-262 909.4 868 56.8
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 3.5e-262 908.7 858 57.0
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.0e-261 907.1 851 56.4
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.3e-260 902.1 871 56.8
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 5.6e-260 901.4 857 55.8
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 8.1e-259 897.5 860 56.9
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 3.4e-257 892.1 857 57.1
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.1e-255 887.1 857 56.6
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 1.7e-253 879.8 858 55.4
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.5e-252 876.7 858 55.7
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.9e-252 876.3 893 53.9
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 1.3e-248 863.6 856 56.0
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 3.2e-247 859.0 718 63.5
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.0e-245 854.0 882 54.2
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 8.1e-243 844.3 871 54.1
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.1e-242 844.0 859 54.1
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 2.4e-242 842.8 839 54.0
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 5.3e-242 841.6 874 53.5
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.2e-239 832.0 850 52.0
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 2.1e-238 829.7 883 52.1
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 2.8e-235 819.3 859 51.2
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.5e-233 813.5 860 52.8
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 8.4e-232 807.7 855 51.8
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.9e-231 806.6 877 52.5
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 3.5e-230 802.4 936 50.7
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.0e-229 800.8 890 50.9
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 5.6e-228 795.0 692 61.4
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 9.6e-228 794.3 850 51.2
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 4.8e-227 792.0 854 50.7
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 4.0e-226 788.9 897 50.3
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 4.5e-225 785.4 877 50.6
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 3.0e-221 772.7 849 49.7
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.9e-221 772.3 904 49.2
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.1e-220 770.8 712 58.1
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 9.6e-220 767.7 646 64.7
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 1.6e-219 766.9 801 53.6
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.1e-219 766.5 854 51.8
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.5e-217 760.4 859 50.8
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 4.5e-217 758.8 854 49.2
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 1.7e-216 756.9 693 58.9
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 3.2e-215 752.7 854 49.2
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 7.1e-215 751.5 854 48.8
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 9.3e-215 751.1 855 49.7
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 1.6e-214 750.4 854 48.9
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 4.6e-214 748.8 854 48.8
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.8e-213 746.9 897 48.9
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 4.3e-212 742.3 925 46.8
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.7e-208 730.3 849 49.1
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 5.5e-207 725.3 860 47.8
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 1.8e-205 720.3 660 57.0
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.1e-204 717.6 881 48.4
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.7e-203 713.8 851 48.3
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 4.1e-202 709.1 854 48.7
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.3e-200 704.1 703 56.6
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 1.4e-199 700.7 792 49.2
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 2.5e-199 699.9 860 47.1
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.0e-193 680.2 871 46.3
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 2.1e-190 670.2 698 55.2
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.0e-189 667.9 613 58.2
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.4e-186 657.5 860 45.5
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.2e-171 607.1 693 51.8
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 5.0e-168 595.9 697 47.8
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.2e-164 584.7 867 42.0
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 2.2e-163 580.5 547 57.0
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 7.8e-153 545.4 639 47.3
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 3.4e-148 530.0 756 42.5
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 3.4e-148 530.0 722 43.6
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 4.3e-143 513.1 871 40.8
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 2.3e-136 490.7 833 37.8
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 2.2e-131 474.2 693 41.8
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.4e-130 471.5 514 47.7
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.6e-113 414.8 752 37.6
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 3.7e-110 403.7 256 80.1
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.6e-100 369.4 242 79.8
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 1.2e-97 362.1 234 80.3
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.1e-95 355.5 778 33.9
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 1.3e-94 352.1 575 38.3
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 4.6e-89 333.6 542 41.0
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 3.9e-88 330.5 981 29.0
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 3.9e-88 330.5 981 29.0
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 9.7e-87 325.9 684 32.6
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.4e-85 321.2 241 68.5
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 3.8e-83 313.9 976 28.3
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 3.9e-80 303.9 192 81.8
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 4.5e-76 290.4 193 77.2
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 7.7e-76 289.7 208 69.2
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 4.2e-74 283.9 498 36.7
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 4.0e-72 277.3 193 72.0
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.9e-66 258.5 333 46.2
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 6.1e-65 253.4 345 40.9
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 4.1e-61 240.7 747 29.0
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 7.2e-58 229.9 188 60.1
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.1e-57 228.4 253 51.0
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.5e-55 222.2 214 52.8
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.7e-51 208.8 138 79.7
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.8e-48 198.7 213 50.7
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 4.1e-45 187.6 335 37.6
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 4.6e-44 184.1 208 51.0
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 6.6e-43 180.3 143 67.8
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.8e-41 174.9 211 46.4
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 4.0e-40 171.0 108 76.9
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 5.2e-40 170.6 184 48.4
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.0e-39 168.7 102 82.4
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.1e-37 162.9 164 51.8
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 3.2e-37 161.4 208 43.3
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.5e-34 151.8 208 45.2
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 6.2e-33 147.1 178 44.4
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.1e-29 136.3 84 84.5
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 5.6e-26 124.0 82 72.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 1.2e-25 122.9 105 67.6
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 1.6e-25 122.5 95 64.2
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 6.2e-25 120.6 186 40.3
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 9.9e-23 113.2 353 28.6
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.2e-22 112.1 110 56.4
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 6.4e-22 110.5 172 40.1
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 2.5e-18 98.6 167 36.5
Potri.006G203601 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.3e-18 97.8 55 89.1
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 1.2e-17 96.3 173 36.4
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 4.9e-14 84.3 113 38.1
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 3.0e-11 75.1 50 68.0
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 9.6e-10 70.1 74 50.0
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.0e-07 62.4 63 55.6


User provided reference genes

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