Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 4.1e-159 564.7 285 100.0
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 3.8e-141 505.0 285 90.9
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 3.8e-141 505.0 285 90.9
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.1e-140 503.4 285 90.2
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 7.2e-140 500.7 285 90.2
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 5.7e-137 491.1 285 87.4
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 1.7e-136 489.6 285 87.0
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.4e-135 486.5 285 86.7
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 4.1e-135 485.0 285 86.3
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 2.0e-134 482.6 285 86.0
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 4.5e-134 481.5 285 86.3
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 3.8e-133 478.4 285 86.0
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.5e-132 476.5 285 85.6
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 2.5e-132 475.7 285 85.3
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 2.5e-132 475.7 285 84.2
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 4.2e-132 474.9 285 85.3
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 7.2e-132 474.2 285 84.2
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 9.4e-132 473.8 285 84.9
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 9.4e-132 473.8 285 84.9
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 9.4e-132 473.8 285 84.6
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 9.4e-132 473.8 285 83.9
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 1.6e-131 473.0 285 84.6
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 2.1e-131 472.6 285 84.2
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 2.7e-131 472.2 285 83.9
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 2.7e-131 472.2 285 83.9
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 2.7e-131 472.2 285 84.2
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 4.7e-131 471.5 285 83.5
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 4.7e-131 471.5 285 84.9
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 4.7e-131 471.5 285 83.5
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 4.7e-131 471.5 285 83.5
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 4.7e-131 471.5 285 84.6
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 4.7e-131 471.5 285 84.6
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 6.1e-131 471.1 285 83.5
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 6.1e-131 471.1 284 84.5
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 8.0e-131 470.7 285 83.5
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 8.0e-131 470.7 285 83.5
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 1.0e-130 470.3 285 84.6
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 1.0e-130 470.3 285 84.6
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 1.0e-130 470.3 285 84.2
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 1.8e-130 469.5 285 83.9
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 1.8e-130 469.5 285 83.9
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.8e-130 469.5 285 82.8
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.8e-130 469.5 285 82.8
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 2.3e-130 469.2 285 83.2
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 3.0e-130 468.8 284 84.5
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 4.0e-130 468.4 285 83.5
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 6.7e-130 467.6 285 83.2
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 6.7e-130 467.6 285 83.2
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 6.7e-130 467.6 285 83.2
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 8.8e-130 467.2 285 83.2
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 8.8e-130 467.2 285 83.2
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 8.8e-130 467.2 285 83.2
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 1.2e-129 466.8 285 83.2
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 1.2e-129 466.8 284 83.5
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 1.2e-129 466.8 285 83.2
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 1.2e-129 466.8 285 83.2
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 1.2e-129 466.8 285 83.9
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 1.2e-129 466.8 285 84.6
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.0e-129 466.1 285 82.5
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.0e-129 466.1 285 83.2
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 2.6e-129 465.7 285 82.8
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 3.3e-129 465.3 285 82.8
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 3.3e-129 465.3 285 82.8
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 3.3e-129 465.3 285 82.8
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.3e-129 465.3 285 82.8
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 3.3e-129 465.3 285 84.2
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 5.7e-129 464.5 285 83.2
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 5.7e-129 464.5 285 82.8
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 7.5e-129 464.2 285 82.5
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 7.5e-129 464.2 282 84.0
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 9.7e-129 463.8 285 82.5
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 9.7e-129 463.8 285 82.8
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 9.7e-129 463.8 285 82.8
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 9.7e-129 463.8 285 82.8
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 9.7e-129 463.8 284 82.7
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 1.3e-128 463.4 285 82.5
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.7e-128 463.0 285 82.5
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 1.7e-128 463.0 285 82.8
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 1.7e-128 463.0 285 82.1
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 2.8e-128 462.2 284 82.7
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 2.8e-128 462.2 285 81.4
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 2.8e-128 462.2 289 81.3
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 3.7e-128 461.8 285 81.8
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 6.3e-128 461.1 285 82.5
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 8.2e-128 460.7 284 82.0
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 8.2e-128 460.7 285 81.8
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 8.2e-128 460.7 288 82.6
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.1e-127 460.3 285 82.1
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 1.1e-127 460.3 285 82.8
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.1e-127 460.3 280 82.9
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 1.4e-127 459.9 285 81.1
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 2.4e-127 459.1 285 82.5
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 4.1e-127 458.4 285 82.5
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 5.3e-127 458.0 285 81.1
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 7.0e-127 457.6 293 80.2
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 9.1e-127 457.2 285 80.7
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 9.1e-127 457.2 285 82.5
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 1.2e-126 456.8 284 81.7
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 1.2e-126 456.8 284 81.7
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.2e-126 456.8 285 83.2
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 1.6e-126 456.4 285 81.4
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 1.6e-126 456.4 285 81.4
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 2.0e-126 456.1 285 81.1
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 2.0e-126 456.1 285 80.4
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 2.7e-126 455.7 285 81.1
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 4.5e-126 454.9 283 82.3
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 5.9e-126 454.5 285 81.8
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 5.9e-126 454.5 285 80.7
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.0e-125 453.8 285 80.0
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.3e-125 453.4 283 81.6
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.3e-125 453.4 283 81.6
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 1.3e-125 453.4 285 80.7
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 2.2e-125 452.6 284 81.0
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 1.1e-124 450.3 285 80.0
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 1.5e-124 449.9 285 79.6
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 1.6e-123 446.4 284 81.3
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.1e-123 446.0 285 79.6
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.7e-123 445.7 301 77.4
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 4.7e-123 444.9 285 78.6
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 6.1e-123 444.5 285 79.6
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.4e-122 443.4 285 79.3
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 6.8e-122 441.0 285 77.5
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 8.8e-122 440.7 285 77.2
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 2.0e-121 439.5 264 84.8
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.6e-121 439.1 280 79.3
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 7.5e-121 437.6 285 77.5
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 2.8e-120 435.6 300 76.7
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 1.6e-118 429.9 285 75.8
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 3.5e-118 428.7 285 77.5
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-116 423.7 265 81.5
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 1.9e-116 422.9 285 76.1
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.3e-116 422.2 265 81.1
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.7e-112 409.8 285 76.1
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 1.2e-110 403.7 285 72.6
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 1.2e-110 403.7 285 72.6
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.7e-110 402.5 337 64.7
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 5.9e-110 401.4 285 71.6
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 5.9e-110 401.4 285 68.8
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 5.9e-110 401.4 285 72.6
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 3.3e-108 395.6 285 74.7
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 2.1e-107 392.9 309 71.8
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 2.8e-107 392.5 285 70.2
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 2.3e-106 389.4 246 80.9
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 3.0e-106 389.0 237 82.3
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 4.0e-106 388.7 270 73.7
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 9.8e-105 384.0 197 93.9
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 1.1e-103 380.6 264 74.6
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.4e-103 380.2 285 71.6
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 9.5e-100 367.5 195 89.7
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.4e-98 363.6 224 83.0
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.2e-89 334.0 281 68.0
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.0e-89 333.2 180 88.9
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 1.4e-87 327.0 284 59.2
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 2.6e-81 306.2 161 91.9
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 2.3e-69 266.5 251 59.4
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 2.8e-67 259.6 253 53.8
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.3e-58 228.8 113 97.3
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.3e-56 224.2 166 72.3
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 2.2e-56 223.4 167 71.9
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 6.7e-53 211.8 159 71.1
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 4.5e-49 199.1 274 48.2
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 2.9e-48 196.4 98 93.9
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 8.2e-43 178.3 196 53.1
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 5.0e-40 169.1 164 59.1
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 3.2e-39 166.4 108 77.8
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 4.6e-38 162.5 135 65.2
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 8.8e-37 158.3 92 84.8
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 2.5e-36 156.8 195 48.2
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 4.5e-33 146.0 84 88.1
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 3.8e-32 142.9 124 64.5
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 7.9e-30 135.2 85 80.0
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 5.9e-25 119.0 113 58.4
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 1.1e-23 114.8 64 87.5
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 3.2e-15 86.7 82 57.3
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 1.4e-13 81.3 56 75.0
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 6.3e-11 72.4 59 62.7
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 1.4e-10 71.2 62 62.9
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 1.3e-08 64.7 44 75.0
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 1.3e-08 64.7 42 78.6
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.8e-08 63.2 52 67.3
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 1.9e-07 60.8 36 75.0
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 3.2e-07 60.1 39 69.2
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 1.6e-06 57.8 36 72.2


User provided reference genes

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