Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 5.8e-164 580.9 301 100.0
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 3.8e-139 498.4 281 92.2
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 1.6e-81 307.0 284 63.4
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 8.3e-78 294.7 282 59.2
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 4.5e-76 288.9 280 62.9
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 2.5e-74 283.1 291 57.7
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 3.6e-73 279.3 216 67.1
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.8e-72 276.9 211 67.3
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 1.8e-72 276.9 283 57.6
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 5.2e-72 275.4 276 59.8
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 6.8e-72 275.0 286 58.7
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 5.7e-71 271.9 279 57.3
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 4.9e-70 268.9 243 60.9
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 4.9e-70 268.9 207 67.6
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 1.1e-69 267.7 218 64.7
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 2.4e-69 266.5 255 58.0
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 2.4e-69 266.5 276 56.2
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 4.1e-69 265.8 243 60.5
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 7.0e-69 265.0 216 64.4
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 7.0e-69 265.0 284 58.5
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 1.6e-68 263.8 285 55.1
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.6e-68 263.8 205 67.3
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 1.6e-68 263.8 274 56.9
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 4.5e-68 262.3 276 54.7
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 7.8e-68 261.5 282 56.4
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.3e-67 260.8 274 56.2
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 1.7e-67 260.4 277 55.6
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 1.7e-67 260.4 284 54.9
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 3.8e-67 259.2 277 56.3
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 3.8e-67 259.2 282 56.4
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 5.0e-67 258.8 205 65.9
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 8.6e-67 258.1 277 53.8
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 1.5e-66 257.3 243 57.2
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 1.9e-66 256.9 279 55.9
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 2.5e-66 256.5 275 56.0
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 2.5e-66 256.5 282 55.0
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 4.3e-66 255.8 211 63.5
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 5.6e-66 255.4 276 54.0
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 7.3e-66 255.0 179 73.2
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 9.5e-66 254.6 219 61.2
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 1.2e-65 254.2 291 54.0
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 4.7e-65 252.3 257 56.4
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 6.1e-65 251.9 284 55.6
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 6.1e-65 251.9 277 53.8
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 8.0e-65 251.5 253 56.9
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 2.3e-64 250.0 279 55.9
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 3.0e-64 249.6 282 55.3
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 4.0e-64 249.2 279 55.9
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 6.8e-64 248.4 194 64.9
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 2.6e-63 246.5 211 57.3
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 5.8e-63 245.4 282 52.1
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 9.8e-63 244.6 281 53.4
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 1.7e-62 243.8 269 52.4
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 1.7e-62 243.8 269 53.2
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 2.9e-62 243.0 211 58.3
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 6.4e-62 241.9 282 52.1
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 1.1e-61 241.1 223 57.4
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 1.4e-61 240.7 271 50.2
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 1.4e-61 240.7 206 61.2
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 1.9e-61 240.4 285 50.5
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 2.4e-61 240.0 266 50.8
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 2.4e-61 240.0 282 51.8
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 3.2e-61 239.6 285 50.5
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 4.1e-61 239.2 206 61.7
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 4.1e-61 239.2 266 53.8
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 7.0e-61 238.4 300 50.7
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 9.2e-61 238.0 266 53.0
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 2.0e-60 236.9 286 50.3
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 2.0e-60 236.9 261 54.4
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 2.7e-60 236.5 261 54.4
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 4.6e-60 235.7 212 58.5
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 6.0e-60 235.3 242 51.7
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 7.8e-60 235.0 265 53.6
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 7.8e-60 235.0 226 56.2
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 3.0e-59 233.0 295 51.2
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 6.6e-59 231.9 286 49.3
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 6.6e-59 231.9 276 48.6
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 3.3e-58 229.6 199 62.8
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 3.3e-58 229.6 263 50.2
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 3.3e-58 229.6 306 49.0
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 6.2e-57 225.3 206 58.3
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 1.1e-56 224.6 295 49.2
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 1.5e-55 220.7 214 58.4
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 9.8e-55 218.0 214 52.8
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 1.3e-54 217.6 252 50.8
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 1.7e-54 217.2 194 57.7
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 4.9e-54 215.7 306 48.0
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 8.3e-54 214.9 281 52.3
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 1.4e-53 214.2 156 73.1
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 1.2e-52 211.1 219 53.9
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 1.7e-51 207.2 203 60.1
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 1.9e-50 203.8 228 51.8
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 9.5e-50 201.4 240 44.2
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 9.5e-50 201.4 154 70.1
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 1.2e-49 201.1 276 46.4
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 2.1e-49 200.3 160 66.9
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 4.0e-48 196.1 158 65.2
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 8.9e-48 194.9 168 59.5
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.0e-47 193.7 145 70.3
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 1.3e-46 191.0 175 61.7
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 1.4e-45 187.6 168 59.5
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 1.4e-45 187.6 178 60.1
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.9e-42 177.2 151 61.6
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 9.5e-42 174.9 205 51.7
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 4.7e-41 172.6 118 72.9
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 1.8e-40 170.6 230 41.7
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 5.2e-40 169.1 202 47.0
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 7.6e-39 165.2 204 44.1
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 4.3e-34 149.4 114 68.4
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.4e-32 144.4 155 55.5
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 1.4e-29 134.4 199 40.7
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 1.7e-27 127.5 207 36.2
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 1.7e-22 110.9 198 34.8
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 1.7e-22 110.9 198 34.8
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 2.4e-21 107.1 82 69.5
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 1.0e-19 101.7 119 47.1
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 1.8e-19 100.9 120 45.8
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 1.1e-18 98.2 123 38.2
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 2.9e-14 83.6 100 51.0
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 4.2e-13 79.7 156 34.6
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 4.2e-13 79.7 226 29.2
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 7.9e-12 75.5 105 45.7
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 1.1e-08 65.1 123 40.7
Peaxi162Scf00767g00522 Petunia axillaris HOM05D001890 ORTHO05D008163 1.3e-06 58.2 212 27.4


User provided reference genes

Program Settings