Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 8.3e-191 670.2 346 100.0
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 6.9e-153 544.3 348 84.8
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.5e-141 505.4 348 79.3
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 3.6e-133 478.8 348 75.9
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 7.8e-88 328.2 364 56.9
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 7.0e-81 305.1 354 55.9
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 7.8e-80 301.6 365 52.6
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 6.6e-79 298.5 353 51.3
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 3.1e-76 289.7 382 50.0
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 6.8e-76 288.5 357 55.7
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 6.8e-76 288.5 351 54.7
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 2.4e-73 280.0 364 49.2
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 6.0e-72 275.4 341 53.1
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 7.8e-72 275.0 344 52.3
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 1.5e-70 270.8 347 51.9
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 2.1e-69 266.9 390 47.7
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 2.6e-67 260.0 387 45.5
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 6.6e-63 245.4 375 46.9
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 5.8e-59 232.3 381 43.8
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 9.9e-59 231.5 371 44.2
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 3.8e-58 229.6 384 44.3
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.1e-54 218.0 366 44.8
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 2.5e-54 216.9 387 42.6
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 2.5e-54 216.9 406 42.9
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 5.6e-54 215.7 379 43.0
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 9.6e-54 214.9 379 42.2
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 9.6e-54 214.9 381 43.0
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 9.6e-54 214.9 379 43.0
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 9.6e-54 214.9 382 42.7
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.1e-52 209.9 379 42.7
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 2.6e-51 206.8 361 44.0
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 1.3e-50 204.5 398 39.4
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 8.4e-50 201.8 344 43.0
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 1.1e-49 201.4 299 44.8
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 1.0e-47 194.9 367 39.8
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.7e-47 194.1 368 40.5
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 3.9e-47 193.0 360 42.5
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 4.3e-46 189.5 377 38.7
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 4.3e-46 189.5 386 39.4
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 5.6e-46 189.1 384 43.0
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 9.6e-46 188.3 368 40.2
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 4.8e-45 186.0 383 39.7
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 8.1e-45 185.3 387 42.4
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 3.1e-44 183.3 363 41.3
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 6.9e-44 182.2 293 43.0
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 4.5e-43 179.5 365 41.1
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 4.9e-42 176.0 388 41.5
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 6.4e-42 175.6 274 46.0
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.1e-41 174.9 379 38.8
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 3.2e-41 173.3 373 41.6
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 9.3e-41 171.8 360 39.7
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 1.0e-39 168.3 299 42.5
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 1.8e-39 167.5 374 39.8
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 3.0e-39 166.8 387 39.0
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 3.0e-39 166.8 248 46.0
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 3.9e-39 166.4 385 37.4
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 1.1e-38 164.9 371 41.5
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.3e-38 162.9 227 48.5
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 4.3e-38 162.9 359 38.7
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 7.4e-38 162.2 350 39.4
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 7.4e-38 162.2 366 38.3
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 9.6e-38 161.8 410 35.6
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.3e-37 161.4 359 38.4
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.1e-37 160.6 216 46.8
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 8.1e-37 158.7 370 38.1
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.8e-36 157.5 376 37.5
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 5.3e-36 156.0 340 37.9
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 1.2e-35 154.8 365 39.2
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.0e-35 154.1 256 45.3
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 3.4e-35 153.3 358 38.3
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 7.6e-35 152.1 222 45.5
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 7.6e-35 152.1 242 42.6
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 1.3e-34 151.4 381 36.5
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 2.9e-34 150.2 219 47.0
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.4e-33 147.9 395 39.5
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 1.9e-33 147.5 302 35.4
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 4.2e-33 146.4 411 32.8
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 1.2e-32 144.8 280 42.5
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 2.1e-32 144.1 405 32.8
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 4.6e-32 142.9 343 35.9
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 1.8e-31 141.0 400 32.8
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 3.0e-31 140.2 353 38.0
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 5.1e-31 139.4 179 49.2
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 8.7e-31 138.7 226 42.0
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.9e-30 137.5 352 36.4
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 9.6e-30 135.2 378 35.2
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 1.3e-29 134.8 358 37.2
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.3e-29 134.8 298 38.3
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 2.1e-29 134.0 434 32.5
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 2.8e-29 133.7 266 42.1
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 4.8e-29 132.9 347 35.4
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 8.2e-29 132.1 346 34.7
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 1.2e-27 128.3 358 34.1
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.0e-27 127.5 271 35.4
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 3.4e-27 126.7 216 39.8
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 1.0e-26 125.2 346 35.3
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 2.2e-26 124.0 354 34.7
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 3.8e-26 123.2 203 44.3
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 2.5e-25 120.6 140 51.4
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 7.1e-25 119.0 285 37.2
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.2e-24 118.2 334 32.9
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 1.6e-24 117.9 336 36.3
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 2.7e-24 117.1 269 36.8
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 2.7e-24 117.1 313 31.3
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.8e-23 114.4 246 37.8
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.9e-23 113.2 122 47.5
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 3.9e-23 113.2 357 33.9
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 4.3e-22 109.8 361 31.3
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 4.3e-22 109.8 247 38.9
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 2.2e-21 107.5 345 32.2
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 3.7e-21 106.7 255 38.4
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 6.3e-21 105.9 154 46.1
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 1.4e-20 104.8 335 31.3
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.8e-20 104.4 351 31.3
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 1.8e-20 104.4 357 30.8
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 2.4e-20 104.0 192 42.7
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 9.0e-20 102.1 164 38.4
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.2e-19 101.7 351 30.8
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.2e-19 101.7 136 44.9
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 1.5e-19 101.3 344 30.8
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 1.5e-19 101.3 344 30.8
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 2.6e-19 100.5 344 29.4
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 3.4e-19 100.1 351 31.1
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 4.5e-19 99.8 345 29.3
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 1.0e-18 98.6 344 31.1
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 1.7e-18 97.8 347 31.7
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 1.7e-18 97.8 347 31.7
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 1.7e-18 97.8 347 31.7
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.9e-18 97.1 337 32.9
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 2.9e-18 97.1 342 29.5
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.9e-18 97.1 197 36.5
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 5.0e-18 96.3 142 42.3
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.5e-17 94.0 132 44.7
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 7.2e-17 92.4 346 29.8
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 1.2e-16 91.7 133 42.1
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.6e-16 91.3 127 44.1
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 7.9e-16 89.0 318 29.2
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 1.4e-15 88.2 343 29.2
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 3.9e-15 86.7 335 30.7
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 5.1e-15 86.3 212 32.1
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.7e-15 85.9 216 33.8
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 6.7e-15 85.9 153 39.2
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.7e-15 85.9 124 41.9
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 1.1e-14 85.1 336 29.2
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.1e-14 85.1 172 39.0
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 1.5e-14 84.7 343 29.7
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 2.5e-14 84.0 56 69.6
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 2.5e-14 84.0 56 69.6
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 3.3e-14 83.6 343 29.4
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 3.3e-14 83.6 140 39.3
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.2e-13 80.9 83 53.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 2.8e-13 80.5 253 31.6
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 2.8e-13 80.5 60 63.3
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 6.3e-13 79.3 41 80.5
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 1.8e-12 77.8 347 28.5
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.8e-12 77.8 97 43.3
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 4.1e-12 76.6 173 34.7
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 9.1e-12 75.5 134 38.8
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 2.5e-09 67.4 86 48.8
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 5.5e-09 66.2 118 40.7
QL07p024385 Quercus lobata HOM05D046221 ORTHO05D014310 7.2e-09 65.9 291 28.2
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.2e-08 65.1 95 44.2
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 6.1e-08 62.8 112 33.9
Rhsim03G0005000 Rhododendron simsii HOM05D003648 ORTHO05D014310 7.9e-08 62.4 204 29.9
QL07p024250 Quercus lobata HOM05D046221 ORTHO05D014310 1.0e-07 62.0 198 29.3
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.3e-07 60.8 91 41.8
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 3.0e-07 60.5 140 33.6
Manes.08G044100 Manihot esculenta HOM05D014635 ORTHO05D014310 1.5e-06 58.2 171 29.2
AUR62012019 Chenopodium quinoa HOM05D003648 ORTHO05D004267 4.4e-06 56.6 370 26.5


User provided reference genes

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