Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 1.0e-265 919.5 450 100.0
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 7.6e-245 850.1 439 93.4
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 3.8e-236 821.2 439 90.2
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 1.3e-231 806.2 442 88.5
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 4.7e-218 761.1 439 82.9
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 2.6e-216 755.4 442 80.5
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 2.2e-215 752.3 449 79.5
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 1.3e-212 743.0 439 79.7
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 2.9e-212 741.9 442 79.9
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 2.9e-212 741.9 439 79.3
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 4.2e-211 738.0 439 79.3
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 6.7e-209 730.7 442 79.2
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.2e-208 729.9 439 78.1
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 1.2e-208 729.9 436 79.8
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 1.5e-208 729.6 439 78.4
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 1.5e-208 729.6 442 77.8
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 3.3e-208 728.4 439 78.8
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 9.7e-208 726.9 439 78.4
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 9.7e-208 726.9 437 78.3
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 3.7e-207 724.9 439 77.9
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 4.8e-207 724.5 442 77.6
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 2.4e-206 722.2 437 80.1
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 4.1e-206 721.5 442 78.3
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 7.0e-206 720.7 436 78.0
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 7.0e-206 720.7 439 78.8
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 5.9e-205 717.6 437 77.8
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 7.7e-205 717.2 436 75.9
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.3e-204 716.5 439 77.4
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 1.2e-202 709.9 456 74.1
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 1.6e-202 709.5 436 76.4
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 2.7e-202 708.8 441 75.5
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 1.4e-201 706.4 428 76.6
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 4.0e-201 704.9 437 75.7
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 4.0e-201 704.9 436 75.7
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 4.0e-201 704.9 436 76.4
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 8.8e-201 703.7 442 74.7
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 2.0e-200 702.6 440 74.8
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 2.6e-200 702.2 434 78.6
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 7.5e-200 700.7 431 76.3
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 7.5e-200 700.7 431 75.9
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 1.3e-199 699.9 436 77.1
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 2.2e-199 699.1 440 74.3
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 2.8e-199 698.7 437 75.3
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 3.7e-199 698.4 441 74.8
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 3.7e-199 698.4 440 75.9
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 4.8e-199 698.0 440 74.8
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 4.8e-199 698.0 441 75.3
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 4.8e-199 698.0 433 75.3
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 6.3e-199 697.6 439 74.0
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 1.1e-198 696.8 428 76.6
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 3.1e-198 695.3 437 75.5
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 7.0e-198 694.1 437 74.8
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 9.1e-198 693.7 440 73.9
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.6e-197 693.0 437 74.4
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 1.6e-197 693.0 438 74.9
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 1.6e-197 693.0 436 73.2
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 5.9e-197 691.0 446 73.3
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 5.9e-197 691.0 440 73.6
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 1.0e-196 690.3 437 74.6
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 2.9e-196 688.7 427 75.6
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 5.0e-196 688.0 442 74.0
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 1.9e-195 686.0 425 76.0
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 2.5e-195 685.6 438 74.4
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 7.2e-195 684.1 450 72.2
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 9.5e-195 683.7 438 73.3
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 3.6e-194 681.8 423 78.3
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 1.0e-193 680.2 437 74.1
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 4.0e-193 678.3 394 80.5
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.5e-192 676.4 428 74.8
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 3.4e-192 675.2 440 73.4
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 2.2e-191 672.5 435 72.9
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 2.2e-191 672.5 425 75.5
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 1.2e-189 666.8 435 72.2
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 1.6e-189 666.4 442 71.7
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 2.3e-188 662.5 421 74.6
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.3e-188 662.5 442 72.6
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 5.0e-188 661.4 466 68.9
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 5.0e-188 661.4 431 72.9
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 5.0e-188 661.4 417 73.6
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 1.5e-187 659.8 423 74.0
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 8.0e-186 654.1 450 70.4
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 1.2e-184 650.2 427 73.3
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 1.2e-184 650.2 414 75.1
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 2.0e-184 649.4 426 72.3
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.3e-183 646.7 453 70.4
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 4.1e-182 641.7 426 70.9
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.7e-181 639.0 424 73.3
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 7.8e-181 637.5 427 70.5
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 1.1e-179 633.6 408 74.0
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 8.3e-175 617.5 495 63.6
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 1.4e-174 616.7 473 66.4
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 6.2e-170 601.3 447 65.5
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.6e-168 595.9 438 63.7
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 2.4e-166 589.3 425 64.5
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 4.3e-163 578.6 538 56.5
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 2.8e-162 575.9 472 62.3
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 8.1e-162 574.3 364 75.3
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 2.6e-160 569.3 396 68.7
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 2.9e-159 565.8 360 76.7
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 3.8e-159 565.5 470 58.7
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 2.4e-158 562.8 439 63.8
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 4.6e-157 558.5 375 69.6
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 2.3e-156 556.2 421 65.8
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 2.7e-149 532.7 436 61.0
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 6.6e-148 528.1 440 57.0
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.6e-144 516.2 432 56.7
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 4.9e-143 511.9 465 57.4
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 1.1e-142 510.8 451 54.5
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 7.1e-142 508.1 421 60.6
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 6.7e-140 501.5 438 54.8
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.5e-134 483.0 431 53.6
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 5.5e-126 455.3 435 51.3
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 3.8e-119 432.6 270 74.8
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 5.0e-119 432.2 410 51.7
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 3.0e-108 396.4 246 73.6
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 6.3e-106 388.7 244 77.9
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 3.5e-96 356.3 279 64.2
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 6.8e-92 342.0 194 79.9
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 6.8e-92 342.0 453 41.7
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.5e-91 340.9 196 80.6
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 3.7e-90 336.3 244 70.5
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 9.1e-89 331.6 508 38.0
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 1.0e-87 328.2 398 39.9
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 1.0e-63 248.4 161 73.9
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 1.6e-61 241.1 193 63.7
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.1e-52 211.8 201 51.7
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 5.4e-49 199.5 184 57.6
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 2.7e-48 197.2 420 32.4
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.1e-46 191.8 242 45.0
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 2.9e-42 177.2 141 61.0
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 1.2e-40 171.8 91 80.2
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 6.0e-40 169.5 185 49.2
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 1.5e-38 164.9 110 64.5
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 1.3e-37 161.8 152 52.0
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 8.1e-37 159.1 132 57.6
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 2.7e-32 144.1 145 53.1
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 3.3e-30 137.1 96 62.5
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 3.6e-29 133.7 86 65.1
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 2.6e-27 127.5 98 65.3
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 6.4e-26 122.9 125 50.4
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 6.7e-23 112.8 126 49.2
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 3.3e-22 110.5 126 46.8
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 5.6e-22 109.8 113 48.7
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 5.1e-15 86.7 66 57.6
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 8.7e-15 85.9 67 65.7
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 6.2e-13 79.7 65 64.6
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 9.0e-12 75.9 64 59.4
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 2.7e-08 64.3 51 60.8
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.0e-07 62.4 43 67.4
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 6.7e-07 59.7 55 54.5
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 6.7e-07 59.7 55 54.5
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 1.9e-06 58.2 53 54.7


User provided reference genes

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