Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 2.9e-163 578.6 303 100.0
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.2e-123 446.0 316 76.6
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 2.2e-123 446.0 338 72.8
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.8e-118 429.1 278 82.7
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 7.5e-111 404.4 295 71.9
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 7.7e-108 394.4 296 69.9
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 2.2e-107 392.9 303 67.3
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 2.2e-107 392.9 306 69.6
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 6.5e-107 391.3 305 66.6
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.9e-106 389.8 274 72.6
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.6e-105 386.7 306 68.3
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.6e-105 386.7 298 67.1
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 1.6e-105 386.7 298 67.1
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 4.7e-105 385.2 306 67.0
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.7e-105 385.2 266 71.4
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 8.0e-105 384.4 305 64.9
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 8.0e-105 384.4 298 66.8
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.4e-104 383.6 301 67.4
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 2.3e-104 382.9 303 68.6
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 3.0e-104 382.5 280 68.2
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 4.0e-104 382.1 269 72.5
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 8.8e-104 380.9 297 66.0
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.2e-103 380.6 303 68.0
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 2.8e-102 375.9 292 67.8
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 3.7e-102 375.6 292 67.8
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 6.3e-102 374.8 301 65.1
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 2.4e-101 372.9 307 64.8
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 5.4e-101 371.7 300 65.3
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 9.1e-101 370.9 292 66.8
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 1.6e-100 370.2 297 65.3
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 2.7e-100 369.4 268 69.8
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.3e-99 367.1 258 70.9
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 5.0e-99 365.2 297 64.3
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.1e-98 364.0 303 64.4
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.1e-98 364.0 297 63.6
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.9e-98 363.2 257 70.4
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 4.2e-98 362.1 282 67.7
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 7.2e-98 361.3 289 66.1
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 2.1e-97 359.8 289 65.4
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 2.8e-97 359.4 273 66.3
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 3.6e-97 359.0 305 62.6
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 6.1e-97 358.2 279 65.2
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 8.0e-97 357.8 300 62.3
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.0e-96 357.5 255 71.0
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.0e-96 357.5 266 68.4
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 4.0e-96 355.5 294 62.2
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 5.2e-96 355.1 296 64.5
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 6.8e-96 354.8 268 67.5
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 6.8e-96 354.8 286 66.4
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 1.5e-95 353.6 288 65.6
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.5e-95 353.6 299 64.2
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.5e-95 353.6 250 71.2
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.6e-95 352.8 295 63.1
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 4.4e-95 352.1 304 62.2
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 4.4e-95 352.1 292 65.1
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.8e-94 349.4 295 62.4
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.8e-94 349.4 309 61.2
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.8e-94 349.4 309 61.2
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 2.8e-94 349.4 257 68.5
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 3.7e-94 349.0 253 70.0
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 4.9e-94 348.6 292 63.4
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.1e-93 347.4 290 61.7
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.8e-93 346.7 306 58.5
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 4.1e-93 345.5 300 60.0
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 2.0e-92 343.2 284 63.4
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.0e-92 343.2 294 62.2
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.5e-92 342.0 301 58.5
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 5.9e-92 341.7 294 60.9
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 7.8e-92 341.3 266 66.2
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 1.7e-91 340.1 284 62.3
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 1.7e-91 340.1 284 62.3
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.3e-91 339.7 300 60.0
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 2.3e-91 339.7 284 62.3
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 3.8e-91 339.0 285 63.2
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 3.8e-91 339.0 293 59.0
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.3e-90 335.9 293 62.8
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 5.6e-90 335.1 285 61.1
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 7.3e-90 334.7 250 67.2
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 7.3e-90 334.7 253 66.8
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 7.3e-90 334.7 234 71.4
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 8.0e-89 331.3 301 57.5
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.4e-88 330.5 270 64.4
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.8e-88 330.1 307 58.3
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 2.3e-88 329.7 292 61.3
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 3.0e-88 329.3 285 61.8
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 4.0e-88 328.9 294 62.2
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 6.8e-88 328.2 297 58.2
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 6.8e-88 328.2 298 57.7
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 6.8e-88 328.2 290 60.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 6.8e-88 328.2 234 69.2
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 8.9e-88 327.8 282 62.1
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.5e-87 327.0 298 57.4
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 3.4e-87 325.9 292 60.6
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 4.4e-87 325.5 298 59.1
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 5.7e-87 325.1 299 57.5
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 5.7e-87 325.1 299 57.5
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 2.2e-86 323.2 259 64.1
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 3.7e-86 322.4 305 56.7
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 4.9e-86 322.0 299 57.2
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 4.9e-86 322.0 300 57.3
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 8.3e-86 321.2 355 52.1
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 1.1e-85 320.9 273 62.6
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 1.8e-85 320.1 280 59.3
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 2.4e-85 319.7 313 56.9
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 3.2e-85 319.3 262 65.6
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 4.1e-85 318.9 307 56.7
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.8e-84 314.7 278 60.4
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 7.8e-84 314.7 296 58.1
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.3e-83 313.9 234 67.5
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.7e-83 313.5 302 59.6
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 5.0e-83 312.0 256 60.5
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 2.5e-82 309.7 227 70.0
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 2.8e-81 306.2 291 57.4
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 4.7e-81 305.4 245 64.9
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.4e-80 303.9 363 49.0
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.8e-80 303.5 291 56.4
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.3e-80 303.1 293 61.8
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 4.1e-77 292.4 280 55.0
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.6e-76 290.4 349 49.3
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 2.0e-76 290.0 238 63.0
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.3e-75 287.3 342 49.7
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.3e-75 287.3 251 61.4
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 3.0e-75 286.2 291 51.9
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 3.9e-75 285.8 238 62.2
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 5.0e-75 285.4 237 62.9
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.9e-74 283.5 244 57.8
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.6e-73 280.4 254 57.5
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.1e-72 276.2 302 53.6
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.2e-72 275.4 225 64.0
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.7e-70 270.4 252 60.3
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 4.9e-70 268.9 291 50.9
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.9e-66 256.9 212 61.3
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.7e-59 233.8 240 48.3
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.3e-59 233.4 449 35.4
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 9.6e-58 228.0 192 64.1
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 6.9e-56 221.9 226 48.2
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 2.2e-54 216.9 173 59.5
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 8.4e-54 214.9 219 57.5
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.2e-53 213.0 294 43.2
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 2.1e-52 210.3 242 46.3
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 3.6e-49 199.5 228 45.6
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 2.4e-48 196.8 236 41.9
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 3.2e-45 186.4 129 69.8
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 1.1e-42 177.9 140 62.1
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 5.8e-39 165.6 186 45.7
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 4.2e-37 159.5 141 58.2
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.9e-26 124.0 118 51.7
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 3.2e-21 106.7 73 74.0
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.6e-20 102.8 74 66.2
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 2.2e-17 94.0 107 43.9
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.3e-14 84.7 67 64.2
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.9e-13 80.9 76 46.1
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 2.5e-13 80.5 174 37.4
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 2.1e-12 77.4 73 57.5
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 1.5e-10 71.2 52 65.4
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 4.8e-09 66.2 47 70.2
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 1.5e-07 61.2 204 28.9
Hund23427 Selenicereus undatus HOM05D002234 ORTHO05D002254 4.5e-07 59.7 248 26.2
GSVIVG01013072001 Vitis vinifera HOM05D002234 ORTHO05D002254 5.9e-07 59.3 253 27.7
FAN14G4716 Fragaria x ananassa HOM05D004474 ORTHO05D210276 1.3e-06 58.2 40 65.0
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 1.3e-06 58.2 84 48.8
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 1.7e-06 57.8 206 27.2
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 2.9e-06 57.0 93 37.6
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 3.8e-06 56.6 198 26.3


User provided reference genes

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