Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0139400 Salix brachista HOM05D002423 ORTHO05D349998 5.0e-41 170.6 84 100.0
Ciclev10010648m.g Citrus clementina HOM05D002423 ORTHO05D002632 2.4e-11 72.0 45 80.0
Dinv41369 Davidia involucrata HOM05D002423 ORTHO05D002632 2.4e-11 72.0 48 75.0
TAR626G1618 Trochodendron aralioides HOM05D002423 ORTHO05D002632 3.2e-11 71.6 48 70.8
Manes.14G144500 Manihot esculenta HOM05D002423 ORTHO05D002632 5.4e-11 70.9 48 70.8
Thecc.09G028900 Theobroma cacao HOM05D002423 ORTHO05D002632 9.2e-11 70.1 47 72.3
Cpa.g.sc46.165 Carica papaya HOM05D002423 ORTHO05D002632 1.6e-10 69.3 86 50.0
Peaxi162Scf00401g00530 Petunia axillaris HOM05D002423 ORTHO05D002632 1.6e-10 69.3 47 68.1
MBI19_g39051_MAGBIO Magnolia biondii HOM05D002423 ORTHO05D002632 2.1e-10 68.9 58 53.4
COL.COLO4_18816 Corchorus olitorius HOM05D000077 ORTHO05D000981 2.7e-10 68.6 47 70.2
TWI34G0481 Tripterygium wilfordii HOM05D002423 ORTHO05D002632 2.7e-10 68.6 42 78.6
MBI18_g30442_MAGBIO Magnolia biondii HOM05D002423 ORTHO05D002632 4.6e-10 67.8 58 53.4
GSVIVG01023621001 Vitis vinifera HOM05D002423 ORTHO05D002632 7.8e-10 67.0 48 70.8
Aqoxy7G02299 Aquilegia oxysepala HOM05D002423 ORTHO05D002632 1.3e-09 66.2 68 50.0
CAN.G160.54 Capsicum annuum HOM05D002423 ORTHO05D002632 1.7e-09 65.9 47 63.8
arahy.Tifrunner.gnm1.ann1.I3B116 Arachis hypogaea HOM05D002423 ORTHO05D002632 2.3e-09 65.5 81 45.7
Solyc07g005670.3 Solanum lycopersicum HOM05D002423 ORTHO05D002632 2.3e-09 65.5 47 63.8
HPP92_017791 Vanilla planifolia HOM05D002423 ORTHO05D002632 3.9e-09 64.7 68 48.5
Zm00001eb134470 Zea mays HOM05D002423 ORTHO05D002632 6.6e-09 63.9 48 58.3
Zm00001eb367760 Zea mays HOM05D002423 ORTHO05D002632 6.6e-09 63.9 48 58.3
arahy.Tifrunner.gnm1.ann1.RKEW7U Arachis hypogaea HOM05D002423 ORTHO05D002632 8.7e-09 63.5 81 44.4
Os04g0165400 Oryza sativa ssp. japonica HOM05D002423 ORTHO05D002632 8.7e-09 63.5 48 56.2
MBI17_g34954_MAGBIO Magnolia biondii HOM05D002423 ORTHO05D002632 1.9e-08 62.4 66 47.0
Dinv22749 Davidia involucrata HOM05D002423 ORTHO05D002632 2.5e-08 62.0 79 43.0
MD09G1251200 Malus domestica HOM05D002423 ORTHO05D002632 2.5e-08 62.0 81 44.4
FvH4_4g10910 Fragaria vesca HOM05D002423 ORTHO05D002632 4.3e-08 61.2 75 46.7
FAN07G0742 Fragaria x ananassa HOM05D002423 ORTHO05D002632 4.3e-08 61.2 75 46.7
FAN12G3655 Fragaria x ananassa HOM05D002423 ORTHO05D002632 4.3e-08 61.2 75 46.7
FAN17G0114 Fragaria x ananassa HOM05D002423 ORTHO05D002632 4.3e-08 61.2 75 46.7
Hma1.2p1_2941F.1_g330620 Hydrangea macrophylla HOM05D002423 ORTHO05D002632 4.3e-08 61.2 81 42.0
CSS0014682 Camellia sinensis var. sinensis HOM05D002423 ORTHO05D002632 7.3e-08 60.5 48 66.7
Lalb_Chr04g0258201 Lupinus albus HOM05D002423 ORTHO05D002632 7.3e-08 60.5 75 44.0
MD17G1243500 Malus domestica HOM05D002423 ORTHO05D002632 7.3e-08 60.5 75 44.0
Manes.11G121900 Manihot esculenta HOM05D002423 ORTHO05D002632 7.3e-08 60.5 79 41.8
RcHm_v2.0_Chr4g0406461 Rosa chinensis HOM05D002423 ORTHO05D002632 9.6e-08 60.1 75 44.0
VMungo1383G3580 Vigna mungo HOM05D002423 ORTHO05D002632 9.6e-08 60.1 75 44.0
Prupe.3G156000 Prunus persica HOM05D002423 ORTHO05D002632 1.2e-07 59.7 75 45.3
Aqoxy4G00860 Aquilegia oxysepala HOM05D002423 ORTHO05D002632 1.6e-07 59.3 76 44.7
Cpa.g.sc9.299 Carica papaya HOM05D002423 ORTHO05D002632 1.6e-07 59.3 75 45.3
Glyma.18G279000 Glycine max HOM05D002423 ORTHO05D002632 1.6e-07 59.3 75 44.0
Gohir.D05G325000 Gossypium hirsutum HOM05D002423 ORTHO05D002632 1.6e-07 59.3 75 44.0
Lj3A24T17 Lonicera japonica HOM05D002423 ORTHO05D002632 1.6e-07 59.3 75 45.3
Oeu038831.1 Olea europaea HOM05D002423 ORTHO05D002632 1.6e-07 59.3 79 43.0
Actinidia24626 Actinidia chinensis HOM05D002423 ORTHO05D002632 2.1e-07 58.9 75 44.0
CANSAT78G2385 Cannabis sativa HOM05D002423 ORTHO05D002632 2.1e-07 58.9 75 44.0
Ca_20734_v3 Cicer arietinum L. HOM05D002423 ORTHO05D002632 2.1e-07 58.9 75 42.7
Gorai.009G349200 Gossypium raimondii HOM05D002423 ORTHO05D002632 2.1e-07 58.9 75 44.0
Medtr6g016655 Medicago truncatula HOM05D002423 ORTHO05D002632 2.1e-07 58.9 75 42.7
Psat1g063080 Pisum sativum HOM05D002423 ORTHO05D002632 2.1e-07 58.9 75 42.7
TPR.G27152 Trifolium pratense HOM05D002423 ORTHO05D002632 2.1e-07 58.9 75 42.7
CSS0005561 Camellia sinensis var. sinensis HOM05D002423 ORTHO05D002632 2.8e-07 58.5 75 42.7
CSS0048904 Camellia sinensis var. sinensis HOM05D002423 ORTHO05D002632 2.8e-07 58.5 75 42.7
GSVIVG01010792001 Vitis vinifera HOM05D002423 ORTHO05D002632 2.8e-07 58.5 75 44.0
EL10Ac3g05982 Beta vulgaris HOM05D002423 ORTHO05D002632 3.6e-07 58.2 81 40.7
Gohir.A05G322500 Gossypium hirsutum HOM05D002423 ORTHO05D002632 3.6e-07 58.2 75 44.0
Lj2A1154T62 Lonicera japonica HOM05D002423 ORTHO05D002632 3.6e-07 58.2 75 44.0
Lalb_Chr02g0158471 Lupinus albus HOM05D002423 ORTHO05D002632 3.6e-07 58.2 75 42.7
SGA_v2.0_scaffold24G10451 Striga asiatica HOM05D002423 ORTHO05D002632 3.6e-07 58.2 81 39.5
TAR365G0426 Trochodendron aralioides HOM05D002423 ORTHO05D002632 3.6e-07 58.2 75 44.0
ATR0751G046 Amborella trichopoda HOM05D002423 ORTHO05D002632 4.7e-07 57.8 73 45.2
MSTRG.1433 Avicennia marina HOM05D002423 ORTHO05D002632 4.7e-07 57.8 81 39.5
CiPaw.01G098200 Carya illinoinensis HOM05D002423 ORTHO05D002632 4.7e-07 57.8 75 42.7
Duzib212G0805 Durio zibethinus HOM05D002423 ORTHO05D002632 4.7e-07 57.8 81 42.0
Lj1A65G52 Lonicera japonica HOM05D002423 ORTHO05D002632 4.7e-07 57.8 75 44.0
Lalb_Chr17g0336651 Lupinus albus HOM05D002423 ORTHO05D002632 4.7e-07 57.8 75 42.7
QL10p050484 Quercus lobata HOM05D002423 ORTHO05D002632 4.7e-07 57.8 75 42.7
Thecc.04G176900 Theobroma cacao HOM05D002423 ORTHO05D002632 4.7e-07 57.8 75 42.7
HPP92_024496 Vanilla planifolia HOM05D002423 ORTHO05D002632 4.7e-07 57.8 68 44.1
Phvul.008G021900 Phaseolus vulgaris HOM05D002423 ORTHO05D002632 6.2e-07 57.4 75 42.7
Rhsim09G0025000 Rhododendron simsii HOM05D002423 ORTHO05D002632 6.2e-07 57.4 75 44.0
SalBow7G2583 Salvia bowleyana HOM05D002423 ORTHO05D002632 6.2e-07 57.4 79 40.5
THA.LOC104803767 Tarenaya hassleriana HOM05D002423 ORTHO05D002632 6.2e-07 57.4 47 61.7
TPR.G20558 Trifolium pratense HOM05D002423 ORTHO05D002632 6.2e-07 57.4 75 42.7
TWI15G1183 Tripterygium wilfordii HOM05D002423 ORTHO05D002632 6.2e-07 57.4 81 40.7
HPP92_014285 Vanilla planifolia HOM05D002423 ORTHO05D002632 6.2e-07 57.4 68 44.1
Aa31LG9G16290 Aethionema arabicum HOM05D002423 ORTHO05D002632 8.1e-07 57.0 47 59.6
BcaC08g44992 Brassica carinata HOM05D002423 ORTHO05D002632 8.1e-07 57.0 47 57.4
BolC6t37785H Brassica oleracea HOM05D002423 ORTHO05D002632 8.1e-07 57.0 47 57.4
Gohir.D02G012900 Gossypium hirsutum HOM05D002423 ORTHO05D002632 8.1e-07 57.0 75 42.7
Gorai.005G016400 Gossypium raimondii HOM05D002423 ORTHO05D002632 8.1e-07 57.0 75 42.7
Lsat_1_v5_gn_8_91160 Lactuca sativa HOM05D002423 ORTHO05D002632 8.1e-07 57.0 75 41.3
Manes.04G043900 Manihot esculenta HOM05D002423 ORTHO05D002632 8.1e-07 57.0 75 42.7
C04p33410 Brassica napus HOM05D002423 ORTHO05D002632 1.1e-06 56.6 47 57.4
C06p26220 Brassica napus HOM05D002423 ORTHO05D002632 1.1e-06 56.6 47 57.4
BolC4t24902H Brassica oleracea HOM05D002423 ORTHO05D002632 1.1e-06 56.6 47 57.4
CDE04G3217 Ceratophyllum demersum HOM05D002423 ORTHO05D002632 1.1e-06 56.6 48 60.4
CDE06G0568 Ceratophyllum demersum HOM05D002423 ORTHO05D002632 1.1e-06 56.6 48 60.4
Os06g0620600 Oryza sativa ssp. japonica HOM05D002423 ORTHO05D002632 1.1e-06 56.6 72 37.5
PSO541G5366 Papaver somniferum HOM05D002423 ORTHO05D002632 1.1e-06 56.6 76 43.4
PSO675G5581 Papaver somniferum HOM05D002423 ORTHO05D002632 1.1e-06 56.6 76 43.4
Psat3g191880 Pisum sativum HOM05D002423 ORTHO05D002632 1.1e-06 56.6 81 39.5
Sopen09g025190 Solanum pennellii HOM05D002423 ORTHO05D002632 1.1e-06 56.6 81 39.5
PGSC0003DMG400018951 Solanum tuberosum HOM05D002423 ORTHO05D002632 1.1e-06 56.6 81 39.5
TWI38G1668 Tripterygium wilfordii HOM05D002423 ORTHO05D002632 1.1e-06 56.6 81 39.5
vmacro00543 Vaccinium macrocarpon HOM05D002423 ORTHO05D002632 1.1e-06 56.6 75 41.3
vmacro14842 Vaccinium macrocarpon HOM05D002423 ORTHO05D002632 1.1e-06 56.6 75 41.3
Ciclev10021639m.g Citrus clementina HOM05D002423 ORTHO05D002632 1.4e-06 56.2 75 40.0
Cc00_g26680 Coffea canephora HOM05D002423 ORTHO05D002632 1.4e-06 56.2 81 38.3
Cc08_g10010 Coffea canephora HOM05D002423 ORTHO05D002632 1.4e-06 56.2 81 38.3
MELO3C017680.2 Cucumis melo HOM05D002423 ORTHO05D002632 1.4e-06 56.2 75 42.7
Lj9A717G71 Lonicera japonica HOM05D002423 ORTHO05D002632 1.4e-06 56.2 43 67.4
Lj2g0016991 Lotus japonicus HOM05D002423 ORTHO05D002632 1.4e-06 56.2 75 41.3
MSTRG.25374 Avicennia marina HOM05D002423 ORTHO05D002632 1.8e-06 55.8 81 38.3
CARHR030380 Cardamine hirsuta HOM05D002423 ORTHO05D002632 1.8e-06 55.8 47 59.6
Duzib175G0009 Durio zibethinus HOM05D002423 ORTHO05D002632 1.8e-06 55.8 75 41.3
ECA236G4547 Erigeron canadensis HOM05D002423 ORTHO05D002632 1.8e-06 55.8 75 40.0
VMungo0464G1710 Vigna mungo HOM05D002423 ORTHO05D002632 1.8e-06 55.8 75 41.3
Actinidia21199 Actinidia chinensis HOM05D002423 ORTHO05D002632 2.4e-06 55.5 75 40.0
AT1G30890 Arabidopsis thaliana HOM05D002423 ORTHO05D002632 2.4e-06 55.5 47 57.4
arahy.Tifrunner.gnm1.ann1.AIM0M3 Arachis hypogaea HOM05D002423 ORTHO05D002632 2.4e-06 55.5 75 40.0
arahy.Tifrunner.gnm1.ann1.BNKV9R Arachis hypogaea HOM05D002423 ORTHO05D002632 2.4e-06 55.5 75 40.0
Carub.0001s2923 Capsella rubella HOM05D002423 ORTHO05D002632 2.4e-06 55.5 47 57.4
Thhalv10008472m.g Eutrema salsugineum HOM05D002423 ORTHO05D002632 2.4e-06 55.5 47 57.4
Glyma.08G256100 Glycine max HOM05D002423 ORTHO05D002632 2.4e-06 55.5 76 40.8
Glyma.13G049600 Glycine max HOM05D002423 ORTHO05D002632 2.4e-06 55.5 75 40.0
Glyma.19G042700 Glycine max HOM05D002423 ORTHO05D002632 2.4e-06 55.5 75 40.0
HanXRQChr01g0017251 Helianthus annuus HOM05D002423 ORTHO05D002632 2.4e-06 55.5 73 41.1
HanXRQChr01g0020721 Helianthus annuus HOM05D002423 ORTHO05D002632 2.4e-06 55.5 73 41.1
Mapoly0058s0027 Marchantia polymorpha HOM05D002423 ORTHO05D002632 2.4e-06 55.5 45 55.6
Medtr7g020800 Medicago truncatula HOM05D002423 ORTHO05D002632 2.4e-06 55.5 47 57.4
Phvul.004G048100 Phaseolus vulgaris HOM05D002423 ORTHO05D002632 2.4e-06 55.5 75 40.0
Sp1g26790 Schrenkiella parvula HOM05D002423 ORTHO05D002632 2.4e-06 55.5 47 57.4
Sed0012688 Sechium edule HOM05D002423 ORTHO05D002632 2.4e-06 55.5 47 57.4
unitig_8.g3347 Utricularia gibba HOM05D002423 ORTHO05D002632 2.4e-06 55.5 81 38.3
Cfa015065 Carpinus fangiana HOM05D002423 ORTHO05D002632 3.1e-06 55.1 47 55.3
Haze_01482 Corylus avellana HOM05D002423 ORTHO05D002632 3.1e-06 55.1 47 55.3
Eucgr.A00096 Eucalyptus grandis HOM05D002423 ORTHO05D002632 3.1e-06 55.1 31 77.4
PSO170G5615 Papaver somniferum HOM05D002423 ORTHO05D002632 3.1e-06 55.1 77 44.2
THA.LOC104798571 Tarenaya hassleriana HOM05D002423 ORTHO05D002632 3.1e-06 55.1 76 42.1
BcaB02g07460 Brassica carinata HOM05D002423 ORTHO05D002632 4.0e-06 54.7 47 55.3
BcaB02g08220 Brassica carinata HOM05D002423 ORTHO05D002632 4.0e-06 54.7 47 55.3
BcaC02g10056 Brassica carinata HOM05D002423 ORTHO05D002632 4.0e-06 54.7 47 55.3
A04p02160 Brassica napus HOM05D002423 ORTHO05D002632 4.0e-06 54.7 47 55.3
A07p24680 Brassica napus HOM05D002423 ORTHO05D002632 4.0e-06 54.7 47 55.3
BraA04t15943Z Brassica rapa HOM05D002423 ORTHO05D002632 4.0e-06 54.7 47 55.3
BraA07t30113Z Brassica rapa HOM05D002423 ORTHO05D002632 4.0e-06 54.7 47 55.3
CARHR169880 Cardamine hirsuta HOM05D002423 ORTHO05D002632 4.0e-06 54.7 47 55.3
DCAR_019400 Daucus carota HOM05D002423 ORTHO05D002632 4.0e-06 54.7 47 61.7
Migut.N03274 Erythranthe guttata HOM05D002423 ORTHO05D002632 4.0e-06 54.7 79 39.2
Thhalv10006169m.g Eutrema salsugineum HOM05D002423 ORTHO05D002632 4.0e-06 54.7 47 55.3
Sp5g03660 Schrenkiella parvula HOM05D002423 ORTHO05D002632 4.0e-06 54.7 47 55.3
THA.LOC104812698 Tarenaya hassleriana HOM05D002423 ORTHO05D002632 4.0e-06 54.7 47 55.3
unitig_22.g6737 Utricularia gibba HOM05D004057 ORTHO05D004805 4.0e-06 54.7 31 77.4
BcaB04g18199 Brassica carinata HOM05D002423 ORTHO05D002632 5.2e-06 54.3 47 55.3
BcaC07g37795 Brassica carinata HOM05D002423 ORTHO05D002632 5.2e-06 54.3 47 55.3
A08p10900 Brassica napus HOM05D002423 ORTHO05D002632 5.2e-06 54.3 47 55.3
BolC8t48186H Brassica oleracea HOM05D002423 ORTHO05D002632 5.2e-06 54.3 47 55.3
BraA08t33087Z Brassica rapa HOM05D002423 ORTHO05D002632 5.2e-06 54.3 47 55.3
CsaV3_4G003750 Cucumis sativus L. HOM05D002423 ORTHO05D002632 5.2e-06 54.3 47 55.3
Eucgr.H00367 Eucalyptus grandis HOM05D002423 ORTHO05D002632 5.2e-06 54.3 47 53.2
Gohir.A02G012200 Gossypium hirsutum HOM05D002423 ORTHO05D002632 5.2e-06 54.3 75 41.3
Nitab4.5_0001511g0010 Nicotiana tabacum HOM05D002423 ORTHO05D002632 5.2e-06 54.3 81 38.3
Sed0020331 Sechium edule HOM05D002423 ORTHO05D002632 5.2e-06 54.3 47 55.3
SMO203G0159 Selaginella moellendorffii HOM05D002423 ORTHO05D002632 5.2e-06 54.3 41 61.0
unitig_748.g7690 Utricularia gibba HOM05D002423 ORTHO05D002632 5.2e-06 54.3 47 55.3
AT3G59500 Arabidopsis thaliana HOM05D002423 ORTHO05D002632 6.9e-06 53.9 47 55.3
C03p29830 Brassica napus HOM05D002423 ORTHO05D002632 6.9e-06 53.9 39 61.5
Carub.0005s2623 Capsella rubella HOM05D002423 ORTHO05D002632 6.9e-06 53.9 47 53.2
DCAR_018471 Daucus carota HOM05D002423 ORTHO05D002632 6.9e-06 53.9 47 53.2
PSO407G0283 Papaver somniferum HOM05D002423 ORTHO05D002632 6.9e-06 53.9 77 44.2
BolC3t15329H Brassica oleracea HOM05D002423 ORTHO05D002632 9.0e-06 53.5 31 74.2
Haze_13432 Corylus avellana HOM05D002423 ORTHO05D002632 9.0e-06 53.5 45 55.6
PGR142G3168 Punica granatum HOM05D002423 ORTHO05D002632 9.0e-06 53.5 47 53.2
PGSC0003DMG400041014 Solanum tuberosum HOM05D002423 ORTHO05D002632 9.0e-06 53.5 32 68.8


User provided reference genes

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