Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0133400 Salix brachista HOM05D000237 ORTHO05D000535 2.0e-62 242.3 125 100.0
Potri.006G173700 Populus trichocarpa HOM05D000237 ORTHO05D000535 8.2e-56 220.3 124 92.7
Sabra18G0083000 Salix brachista HOM05D000237 ORTHO05D000535 6.7e-50 200.7 123 85.4
Potri.018G096100 Populus trichocarpa HOM05D000237 ORTHO05D000535 1.0e-42 176.8 124 79.8
Thecc.09G164800 Theobroma cacao HOM05D000237 ORTHO05D000535 1.4e-42 176.4 124 73.4
COL.COLO4_34126 Corchorus olitorius HOM05D000237 ORTHO05D000535 4.0e-42 174.9 124 74.2
Ciclev10007784m.g Citrus clementina HOM05D000237 ORTHO05D000535 6.8e-42 174.1 124 75.0
Atru.chr7.578 Acer truncatum HOM05D000237 ORTHO05D000535 3.4e-41 171.8 124 74.2
QL02p096666 Quercus lobata HOM05D000237 ORTHO05D000535 5.7e-41 171.0 124 71.8
Gohir.A08G086900 Gossypium hirsutum HOM05D000237 ORTHO05D000535 9.8e-41 170.2 124 70.2
Prupe.1G094200 Prunus persica HOM05D000237 ORTHO05D000535 3.7e-40 168.3 124 71.0
Gohir.D08G096233 Gossypium hirsutum HOM05D000237 ORTHO05D000535 4.8e-40 167.9 124 69.4
Manes.06G028500 Manihot esculenta HOM05D000237 ORTHO05D000535 6.3e-40 167.5 127 74.0
Gorai.004G102100 Gossypium raimondii HOM05D000237 ORTHO05D000535 1.8e-39 166.0 124 68.5
GSVIVG01029106001 Vitis vinifera HOM05D000237 ORTHO05D000535 5.4e-39 164.5 124 66.9
Gorai.012G095500 Gossypium raimondii HOM05D000237 ORTHO05D000535 7.0e-39 164.1 124 66.9
Cfa013530 Carpinus fangiana HOM05D000237 ORTHO05D000535 1.2e-38 163.3 124 66.9
Gohir.D04G085500 Gossypium hirsutum HOM05D000237 ORTHO05D000535 1.6e-38 162.9 122 67.2
Gohir.1Z047500 Gossypium hirsutum HOM05D000237 ORTHO05D000535 2.7e-38 162.2 116 70.7
MD16G1264900 Malus domestica HOM05D000237 ORTHO05D000535 3.5e-38 161.8 124 71.8
TWI34G1881 Tripterygium wilfordii HOM05D000237 ORTHO05D000535 4.5e-38 161.4 127 70.1
Glyma.17G066700 Glycine max HOM05D000237 ORTHO05D000535 1.3e-37 159.8 124 64.5
VMungo1215G0585 Vigna mungo HOM05D000237 ORTHO05D000535 3.8e-37 158.3 124 62.9
Phvul.003G149100 Phaseolus vulgaris HOM05D000237 ORTHO05D000535 8.6e-37 157.1 124 63.7
arahy.Tifrunner.gnm1.ann1.AJ2ENL Arachis hypogaea HOM05D000237 ORTHO05D000535 1.1e-36 156.8 124 65.3
arahy.Tifrunner.gnm1.ann1.N89UES Arachis hypogaea HOM05D000237 ORTHO05D000535 1.1e-36 156.8 124 65.3
MD13G1263500 Malus domestica HOM05D000237 ORTHO05D000535 1.9e-36 156.0 124 70.2
CiPaw.08G038100 Carya illinoinensis HOM05D000237 ORTHO05D000535 2.5e-36 155.6 126 67.5
Glyma.13G093700 Glycine max HOM05D000237 ORTHO05D000535 3.3e-36 155.2 124 62.9
Lj4g0025905 Lotus japonicus HOM05D000085 ORTHO05D000535 1.2e-35 153.3 124 61.3
FAN17G2323 Fragaria x ananassa HOM05D000237 ORTHO05D000535 1.6e-35 152.9 123 66.7
Ca_21195_v3 Cicer arietinum L. HOM05D000237 ORTHO05D000535 2.1e-35 152.5 119 64.7
TPR.G5345 Trifolium pratense HOM05D000237 ORTHO05D000535 2.1e-35 152.5 118 65.3
Cpa.g.sc95.77 Carica papaya HOM05D000237 ORTHO05D000535 2.8e-35 152.1 116 69.8
Actinidia24538 Actinidia chinensis HOM05D000237 ORTHO05D000535 4.7e-35 151.4 122 64.8
Dinv41286 Davidia involucrata HOM05D000237 ORTHO05D000535 8.0e-35 150.6 135 61.5
FvH4_4g08510 Fragaria vesca HOM05D000237 ORTHO05D000535 2.3e-34 149.1 123 65.0
FAN12G2828 Fragaria x ananassa HOM05D000237 ORTHO05D000535 2.3e-34 149.1 123 65.0
CSS0006436 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 8.9e-34 147.1 120 64.2
CSS0009210 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 8.9e-34 147.1 120 64.2
Psat4g011080 Pisum sativum HOM05D000237 ORTHO05D000535 1.5e-33 146.4 120 63.3
Lalb_Chr07g0180211 Lupinus albus HOM05D000237 ORTHO05D000535 4.4e-33 144.8 124 58.1
FAN07G0356 Fragaria x ananassa HOM05D000237 ORTHO05D000535 5.7e-33 144.4 123 64.2
Medtr4g128990 Medicago truncatula HOM05D000237 ORTHO05D000535 9.8e-33 143.7 120 62.5
RcHm_v2.0_Chr4g0403861 Rosa chinensis HOM05D000237 ORTHO05D000535 2.8e-32 142.1 124 65.3
vmacro13094 Vaccinium macrocarpon HOM05D000237 ORTHO05D000535 3.7e-32 141.7 123 58.5
Eucgr.C02424 Eucalyptus grandis HOM05D000237 ORTHO05D000535 1.4e-31 139.8 124 61.3
Hma1.2p1_1261F.1_g271130 Hydrangea macrophylla HOM05D000237 ORTHO05D000535 1.4e-31 139.8 133 57.9
Lj9C691G0 Lonicera japonica HOM05D000237 ORTHO05D000535 1.8e-31 139.4 136 57.4
BcaB08g36125 Brassica carinata HOM05D000237 ORTHO05D000535 9.2e-31 137.1 118 63.6
Thhalv10013078m.g Eutrema salsugineum HOM05D000237 ORTHO05D000535 9.2e-31 137.1 109 64.2
PGSC0003DMG400027459 Solanum tuberosum HOM05D000237 ORTHO05D000535 1.6e-30 136.3 128 58.6
BcaC04g19938 Brassica carinata HOM05D000237 ORTHO05D000535 2.7e-30 135.6 109 67.0
C09p49570 Brassica napus HOM05D000237 ORTHO05D000535 2.7e-30 135.6 109 67.0
BolC9t57810H Brassica oleracea HOM05D000237 ORTHO05D000535 2.7e-30 135.6 109 67.0
AT5G57670 Arabidopsis thaliana HOM05D000237 ORTHO05D000535 4.5e-30 134.8 109 64.2
Peaxi162Scf00942g00131 Petunia axillaris HOM05D000085 ORTHO05D000535 4.5e-30 134.8 124 58.1
A10p15080 Brassica napus HOM05D000237 ORTHO05D000535 5.9e-30 134.4 109 66.1
Carub.0008s1818 Capsella rubella HOM05D000237 ORTHO05D000535 1.0e-29 133.7 109 64.2
AL8G33700 Arabidopsis lyrata HOM05D000237 ORTHO05D000535 1.3e-29 133.3 109 64.2
CARHR271430 Cardamine hirsuta HOM05D000237 ORTHO05D000535 2.3e-29 132.5 109 62.4
ClCG11G012290 Citrullus lanatus HOM05D000237 ORTHO05D000535 5.0e-29 131.3 124 61.3
CsaV3_2G008240 Cucumis sativus L. HOM05D000237 ORTHO05D000535 6.6e-29 131.0 124 61.3
Sed0017426 Sechium edule HOM05D000237 ORTHO05D000535 1.1e-28 130.2 124 59.7
MELO3C004046.2 Cucumis melo HOM05D000237 ORTHO05D000535 1.5e-28 129.8 124 61.3
THA.LOC104811813 Tarenaya hassleriana HOM05D000237 ORTHO05D000535 1.5e-28 129.8 118 59.3
Sopen07g002730 Solanum pennellii HOM05D000237 ORTHO05D000535 1.9e-28 129.4 140 52.1
DCAR_020111 Daucus carota HOM05D000237 ORTHO05D000535 2.5e-28 129.0 124 54.8
Aa31LG3G13510 Aethionema arabicum HOM05D000237 ORTHO05D000535 4.3e-28 128.3 108 62.0
Cc06_g13700 Coffea canephora HOM05D000237 ORTHO05D000535 4.3e-28 128.3 128 57.8
Rhsim01G0009000 Rhododendron simsii HOM05D000237 ORTHO05D000535 1.2e-27 126.7 125 55.2
PGR102G2527 Punica granatum HOM05D000237 ORTHO05D000535 1.6e-27 126.3 127 53.5
Aqoxy7G03175 Aquilegia oxysepala HOM05D000237 ORTHO05D000535 4.7e-27 124.8 120 56.7
Migut.K00263 Erythranthe guttata HOM05D000237 ORTHO05D000535 8.0e-27 124.0 124 53.2
Sc14g0001160 Simmondsia chinensis HOM05D000237 ORTHO05D000535 1.0e-26 123.6 120 53.3
Haze_22138 Corylus avellana HOM05D000237 ORTHO05D000535 1.4e-26 123.2 124 55.6
Solyc07g006620.4 Solanum lycopersicum HOM05D000237 ORTHO05D000535 8.9e-26 120.6 171 45.0
Lsat_1_v5_gn_7_51720 Lactuca sativa HOM05D000237 ORTHO05D000535 1.2e-25 120.2 135 50.4
MBI14_g07722_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D000535 1.2e-25 120.2 121 54.5
HanXRQChr03g0071271 Helianthus annuus HOM05D000237 ORTHO05D000535 2.6e-25 119.0 131 50.4
AUR62039983 Chenopodium quinoa HOM05D000237 ORTHO05D000535 4.9e-24 114.8 126 48.4
AUR62040291 Chenopodium quinoa HOM05D000237 ORTHO05D000535 1.1e-23 113.6 123 46.3
SalBow1G4083 Salvia bowleyana HOM05D000237 ORTHO05D000535 1.4e-23 113.2 129 48.1
Hund26381 Selenicereus undatus HOM05D000237 ORTHO05D000535 1.4e-23 113.2 125 47.2
Ah.09g229680 Amaranthus hybridus HOM05D000237 ORTHO05D000535 9.2e-23 110.5 124 48.4
ATR0684G142 Amborella trichopoda HOM05D000237 ORTHO05D000535 9.2e-23 110.5 118 48.3
EL10Ac8g18259 Beta vulgaris HOM05D000237 ORTHO05D000535 9.2e-23 110.5 125 46.4
PSO782G4690 Papaver somniferum HOM05D000237 ORTHO05D000535 2.0e-22 109.4 126 46.8
PSO063G5734 Papaver somniferum HOM05D000237 ORTHO05D000535 2.3e-21 105.9 126 46.0
Sp6g19360 Schrenkiella parvula HOM05D000237 ORTHO05D000535 7.3e-20 100.9 79 65.8
ECA240G2639 Erigeron canadensis HOM05D000237 ORTHO05D000535 1.2e-17 93.6 109 46.8
Nitab4.5_0013043g0010 Nicotiana tabacum HOM05D000237 ORTHO05D000535 2.2e-16 89.4 122 45.1
Os08g0249100 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D000535 2.4e-15 85.9 118 42.4
SEGI_07572 Sequoiadendron giganteum HOM05D000237 ORTHO05D000535 1.2e-14 83.6 117 41.9
Nn8g40379 Nelumbo nucifera HOM05D000237 ORTHO05D000535 2.1e-14 82.8 78 53.8
HPP92_003036 Vanilla planifolia HOM05D000237 ORTHO05D000535 7.8e-14 80.9 98 45.9
Zm00001eb412910 Zea mays HOM05D000237 ORTHO05D000535 7.8e-14 80.9 118 39.8
SGA_v2.0_scaffold12G06051 Striga asiatica HOM05D000237 ORTHO05D000535 1.3e-13 80.1 132 43.9
SEGI_38376 Sequoiadendron giganteum HOM05D000237 ORTHO05D000535 2.3e-13 79.3 115 39.1
SEGI_36839 Sequoiadendron giganteum HOM05D000237 ORTHO05D000535 3.6e-11 72.0 106 39.6
CSS0021622 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 4.4e-09 65.1 49 63.3
Nitab4.5_0000244g0120 Nicotiana tabacum HOM05D000085 ORTHO05D001615 1.9e-07 59.7 113 38.9
Potri.005G182800 Populus trichocarpa HOM05D000237 ORTHO05D001145 1.9e-07 59.7 120 35.0
SEGI_10155 Sequoiadendron giganteum HOM05D000237 ORTHO05D000535 1.9e-07 59.7 90 37.8
Manes.02G168800 Manihot esculenta HOM05D000237 ORTHO05D001145 4.1e-07 58.5 107 37.4
AagrBONN_evm.TU.Sc2ySwM_368.379 Anthoceros agrestis HOM05D000237 ORTHO05D000535 5.4e-07 58.2 119 32.8
RcHm_v2.0_Chr2g0122201 Rosa chinensis HOM05D000237 ORTHO05D001145 1.2e-06 57.0 114 36.0
Manes.18G082900 Manihot esculenta HOM05D000237 ORTHO05D001145 1.6e-06 56.6 122 35.2
Lalb_Chr11g0066201 Lupinus albus HOM05D000237 ORTHO05D001145 2.1e-06 56.2 113 32.7
FAN26G2988 Fragaria x ananassa HOM05D000237 ORTHO05D001145 4.6e-06 55.1 108 35.2
SEGI_06060 Sequoiadendron giganteum HOM05D000237 ORTHO05D000535 4.6e-06 55.1 89 36.0
SGA_v2.0_scaffold58G20369 Striga asiatica HOM05D000237 ORTHO05D001145 4.6e-06 55.1 117 33.3
Glyma.14G155500 Glycine max HOM05D000237 ORTHO05D001145 6.0e-06 54.7 111 31.5
Lj1g0008419 Lotus japonicus HOM05D000237 ORTHO05D001145 6.0e-06 54.7 105 32.4
MBI06_g35215_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D001145 6.0e-06 54.7 116 32.8
Ciclev10000358m.g Citrus clementina HOM05D000237 ORTHO05D001145 7.8e-06 54.3 107 34.6
Cc10_g13710 Coffea canephora HOM05D000237 ORTHO05D001145 7.8e-06 54.3 117 34.2
Glyma.06G155500 Glycine max HOM05D000237 ORTHO05D001145 7.8e-06 54.3 113 31.0
Glyma.13G034500 Glycine max HOM05D000237 ORTHO05D001145 7.8e-06 54.3 111 31.5


User provided reference genes

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