Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0132900 Salix brachista HOM05D000108 ORTHO05D048826 5.6e-40 167.2 84 100.0
Sabra02G0179500 Salix brachista HOM05D000108 ORTHO05D001781 1.1e-14 83.2 47 87.2
Potri.002G235500 Populus trichocarpa HOM05D000108 ORTHO05D001781 4.0e-14 81.3 47 87.2
Sabra14G0112400 Salix brachista HOM05D000108 ORTHO05D001781 4.0e-14 81.3 47 85.1
BcaC06g35554 Brassica carinata HOM05D000108 ORTHO05D001781 8.9e-14 80.1 47 80.9
C07p13580 Brassica napus HOM05D000108 ORTHO05D001781 8.9e-14 80.1 47 80.9
BolC7t41853H Brassica oleracea HOM05D000108 ORTHO05D001781 8.9e-14 80.1 47 80.9
Manes.05G198100 Manihot esculenta HOM05D000108 ORTHO05D001781 8.9e-14 80.1 47 85.1
Migut.G01138 Erythranthe guttata HOM05D000108 ORTHO05D001781 1.2e-13 79.7 47 80.9
CSS0025991 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001781 1.5e-13 79.3 47 80.9
SGA_v2.0_scaffold17G08030 Striga asiatica HOM05D000108 ORTHO05D001781 1.5e-13 79.3 47 80.9
Aa31LG8G10230 Aethionema arabicum HOM05D000108 ORTHO05D001781 2.0e-13 79.0 47 83.0
CARHR099650 Cardamine hirsuta HOM05D000108 ORTHO05D001781 2.0e-13 79.0 47 83.0
Cpa.g.sc157.6 Carica papaya HOM05D000108 ORTHO05D001781 2.0e-13 79.0 47 83.0
AL3G38530 Arabidopsis lyrata HOM05D000108 ORTHO05D001781 3.4e-13 78.2 47 80.9
AT3G23670 Arabidopsis thaliana HOM05D000108 ORTHO05D001781 3.4e-13 78.2 47 80.9
BcaB06g26521 Brassica carinata HOM05D000108 ORTHO05D001781 3.4e-13 78.2 47 80.9
Carub.0003s2397 Capsella rubella HOM05D000108 ORTHO05D001781 3.4e-13 78.2 47 80.9
Thhalv10002371m.g Eutrema salsugineum HOM05D000108 ORTHO05D001781 3.4e-13 78.2 47 80.9
AL7G42230 Arabidopsis lyrata HOM05D000108 ORTHO05D001781 4.4e-13 77.8 47 80.9
AT4G14150 Arabidopsis thaliana HOM05D000108 ORTHO05D001781 4.4e-13 77.8 47 80.9
A01p31370 Brassica napus HOM05D000108 ORTHO05D001781 4.4e-13 77.8 47 80.9
C01p39960 Brassica napus HOM05D000108 ORTHO05D001781 4.4e-13 77.8 47 80.9
BolC1t03951H Brassica oleracea HOM05D000108 ORTHO05D001781 4.4e-13 77.8 47 80.9
BraA01t03262Z Brassica rapa HOM05D000108 ORTHO05D001781 4.4e-13 77.8 47 80.9
Thhalv10024229m.g Eutrema salsugineum HOM05D000108 ORTHO05D001781 4.4e-13 77.8 47 80.9
Potri.014G149000 Populus trichocarpa HOM05D000108 ORTHO05D001781 4.4e-13 77.8 47 83.0
Sp7g12020 Schrenkiella parvula HOM05D000108 ORTHO05D001781 4.4e-13 77.8 47 80.9
Glyma.11G253200 Glycine max HOM05D000108 ORTHO05D001781 5.8e-13 77.4 47 78.7
Glyma.18G003800 Glycine max HOM05D000108 ORTHO05D001781 5.8e-13 77.4 47 78.7
Phvul.001G264500 Phaseolus vulgaris HOM05D000108 ORTHO05D001781 5.8e-13 77.4 47 78.7
VMungo1383G0476 Vigna mungo HOM05D000108 ORTHO05D001781 5.8e-13 77.4 47 78.7
A07p08750 Brassica napus HOM05D000108 ORTHO05D001781 7.6e-13 77.0 47 78.7
BraA07t28663Z Brassica rapa HOM05D000108 ORTHO05D001781 7.6e-13 77.0 47 78.7
Sp3g21390 Schrenkiella parvula HOM05D000108 ORTHO05D001781 7.6e-13 77.0 47 78.7
Atru.chr3.1770 Acer truncatum HOM05D000108 ORTHO05D001781 9.9e-13 76.6 47 78.7
Gohir.A05G327500 Gossypium hirsutum HOM05D000108 ORTHO05D001781 9.9e-13 76.6 45 84.4
Manes.01G003100 Manihot esculenta HOM05D000108 ORTHO05D001781 9.9e-13 76.6 47 80.9
Sc19g0007460 Simmondsia chinensis HOM05D000108 ORTHO05D001781 9.9e-13 76.6 47 78.7
TWI09G0647 Tripterygium wilfordii HOM05D000108 ORTHO05D001781 9.9e-13 76.6 47 78.7
vmacro15595 Vaccinium macrocarpon HOM05D000108 ORTHO05D001781 9.9e-13 76.6 47 76.6
Actinidia13835 Actinidia chinensis HOM05D000108 ORTHO05D001781 1.3e-12 76.3 47 78.7
TAR365G0126 Trochodendron aralioides HOM05D000108 ORTHO05D001781 1.7e-12 75.9 47 76.6
COL.COLO4_35968 Corchorus olitorius HOM05D000108 ORTHO05D001781 2.9e-12 75.1 47 78.7
Medtr3g085000 Medicago truncatula HOM05D000108 ORTHO05D048826 2.9e-12 75.1 47 76.6
TWI73G0014 Tripterygium wilfordii HOM05D000108 ORTHO05D001781 2.9e-12 75.1 47 78.7
Ciclev10004158m.g Citrus clementina HOM05D000108 ORTHO05D001781 3.8e-12 74.7 47 78.7
Haze_11691 Corylus avellana HOM05D000108 ORTHO05D001781 3.8e-12 74.7 47 76.6
Gohir.D10G135500 Gossypium hirsutum HOM05D000108 ORTHO05D001781 3.8e-12 74.7 47 78.7
Gorai.009G351600 Gossypium raimondii HOM05D000108 ORTHO05D001781 3.8e-12 74.7 44 84.1
Gorai.011G150300 Gossypium raimondii HOM05D000108 ORTHO05D001781 3.8e-12 74.7 47 78.7
CANSAT78G1420 Cannabis sativa HOM05D000108 ORTHO05D001781 4.9e-12 74.3 47 74.5
CiPaw.01G112300 Carya illinoinensis HOM05D000108 ORTHO05D001781 4.9e-12 74.3 47 76.6
Rhsim02G0069900 Rhododendron simsii HOM05D000108 ORTHO05D001781 4.9e-12 74.3 47 74.5
SalBow2G3643 Salvia bowleyana HOM05D000108 ORTHO05D001781 4.9e-12 74.3 47 76.6
Aa31LG8G10220 Aethionema arabicum HOM05D000108 ORTHO05D001781 6.4e-12 73.9 47 76.6
arahy.Tifrunner.gnm1.ann1.Q869IZ Arachis hypogaea HOM05D000108 ORTHO05D001781 6.4e-12 73.9 47 76.6
PGR142G1031 Punica granatum HOM05D000108 ORTHO05D001781 6.4e-12 73.9 47 74.5
Hund24444 Selenicereus undatus HOM05D000108 ORTHO05D001781 6.4e-12 73.9 47 74.5
Ca_16435_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001781 8.4e-12 73.6 47 78.7
GSVIVG01021031001 Vitis vinifera HOM05D000108 ORTHO05D001781 1.1e-11 73.2 47 74.5
arahy.Tifrunner.gnm1.ann1.X8LLQZ Arachis hypogaea HOM05D000108 ORTHO05D001781 1.4e-11 72.8 47 74.5
Ca_18011_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001781 1.4e-11 72.8 47 70.2
Duzib212G0098 Durio zibethinus HOM05D000108 ORTHO05D001781 1.4e-11 72.8 47 76.6
Duzib212G0747 Durio zibethinus HOM05D000108 ORTHO05D001781 1.4e-11 72.8 47 76.6
Gohir.A10G131200 Gossypium hirsutum HOM05D000108 ORTHO05D001781 1.4e-11 72.8 46 78.3
THA.LOC104804780 Tarenaya hassleriana HOM05D000108 ORTHO05D001781 1.9e-11 72.4 47 74.5
Duzib151G0632 Durio zibethinus HOM05D000108 ORTHO05D001781 2.4e-11 72.0 47 74.5
Cfa008671 Carpinus fangiana HOM05D000108 ORTHO05D001781 3.2e-11 71.6 47 74.5
Eucgr.L00643 Eucalyptus grandis HOM05D000108 ORTHO05D001781 3.2e-11 71.6 46 78.3
Oeu034297.2 Olea europaea HOM05D000108 ORTHO05D001781 3.2e-11 71.6 47 76.6
Lj6g0004106 Lotus japonicus HOM05D000108 ORTHO05D001781 5.4e-11 70.9 47 72.3
MBI11_g22679_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001781 5.4e-11 70.9 47 72.3
Medtr8g080910 Medicago truncatula HOM05D000108 ORTHO05D001781 5.4e-11 70.9 47 68.1
PSO017G4009 Papaver somniferum HOM05D000108 ORTHO05D001781 5.4e-11 70.9 47 70.2
PSO675G2329 Papaver somniferum HOM05D000108 ORTHO05D001781 5.4e-11 70.9 47 70.2
THA.LOC104808676 Tarenaya hassleriana HOM05D000108 ORTHO05D001781 5.4e-11 70.9 47 70.2
unitig_747.g21701 Utricularia gibba HOM05D000108 ORTHO05D001781 5.4e-11 70.9 47 72.3
Lj3A357T49 Lonicera japonica HOM05D000108 ORTHO05D001781 7.1e-11 70.5 47 70.2
Sopen09g035800 Solanum pennellii HOM05D000108 ORTHO05D001781 7.1e-11 70.5 47 70.2
PGSC0003DMG400016627 Solanum tuberosum HOM05D000108 ORTHO05D001781 7.1e-11 70.5 47 70.2
ATR0561G153 Amborella trichopoda HOM05D000108 ORTHO05D001781 9.2e-11 70.1 46 73.9
EL10Ac3g07421 Beta vulgaris HOM05D000108 ORTHO05D001781 9.2e-11 70.1 47 70.2
HanXRQChr01g0021961 Helianthus annuus HOM05D000108 ORTHO05D001781 9.2e-11 70.1 47 76.6
Nitab4.5_0000309g0250 Nicotiana tabacum HOM05D000108 ORTHO05D001781 9.2e-11 70.1 47 68.1
Nitab4.5_0010381g0020 Nicotiana tabacum HOM05D000108 ORTHO05D001781 9.2e-11 70.1 47 68.1
ClCG05G007110 Citrullus lanatus HOM05D000108 ORTHO05D001781 1.2e-10 69.7 47 72.3
Glyma.08G106400 Glycine max HOM05D000108 ORTHO05D001781 1.2e-10 69.7 47 72.3
Lsat_1_v5_gn_6_58521 Lactuca sativa HOM05D000108 ORTHO05D001781 1.2e-10 69.7 47 70.2
TAR636G1537 Trochodendron aralioides HOM05D000108 ORTHO05D001781 1.2e-10 69.7 47 72.3
Nn1g08106 Nelumbo nucifera HOM05D000108 ORTHO05D001781 1.6e-10 69.3 47 70.2
Prupe.1G173100 Prunus persica HOM05D000108 ORTHO05D001781 1.6e-10 69.3 47 70.2
Solyc09g097860.4 Solanum lycopersicum HOM05D000108 ORTHO05D001781 1.6e-10 69.3 47 70.2
SEGI_27266 Sequoiadendron giganteum HOM05D000108 ORTHO05D001781 2.1e-10 68.9 47 68.1
PGSC0003DMG400004673 Solanum tuberosum HOM05D000108 ORTHO05D001781 2.1e-10 68.9 46 69.6
CAN.G1325.2 Capsicum annuum HOM05D000108 ORTHO05D001781 2.7e-10 68.6 47 68.1
MELO3C006790.2 Cucumis melo HOM05D000108 ORTHO05D001781 2.7e-10 68.6 47 70.2
ECA248G1770 Erigeron canadensis HOM05D000108 ORTHO05D001781 3.5e-10 68.2 64 56.2
MD04G1023400 Malus domestica HOM05D000108 ORTHO05D001781 3.5e-10 68.2 47 68.1
MD13G1280700 Malus domestica HOM05D000108 ORTHO05D001781 3.5e-10 68.2 47 68.1
Peaxi162Scf00286g00077 Petunia axillaris HOM05D000108 ORTHO05D001781 3.5e-10 68.2 47 68.1
CsaV3_3G015910 Cucumis sativus L. HOM05D000108 ORTHO05D001781 4.6e-10 67.8 47 70.2
Nitab4.5_0007541g0010 Nicotiana tabacum HOM05D000108 ORTHO05D001781 4.6e-10 67.8 46 67.4
Nitab4.5_0011040g0040 Nicotiana tabacum HOM05D000108 ORTHO05D001781 4.6e-10 67.8 46 67.4
Peaxi162Scf00378g00417 Petunia axillaris HOM05D000108 ORTHO05D001781 4.6e-10 67.8 46 67.4
Glyma.05G149700 Glycine max HOM05D000108 ORTHO05D001781 6.0e-10 67.4 44 75.0
MBI11_g22680_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001781 6.0e-10 67.4 47 68.1
Aqoxy2G03990 Aquilegia oxysepala HOM05D000108 ORTHO05D001781 7.8e-10 67.0 46 69.6
Dinv32176 Davidia involucrata HOM05D000108 ORTHO05D001781 7.8e-10 67.0 47 70.2
Sed0005082 Sechium edule HOM05D000108 ORTHO05D001781 7.8e-10 67.0 47 68.1
Lj4g0020986 Lotus japonicus HOM05D000108 ORTHO05D001781 1.3e-09 66.2 53 60.4
FvH4_4g12770 Fragaria vesca HOM05D000108 ORTHO05D001781 1.7e-09 65.9 47 66.0
FAN07G1654 Fragaria x ananassa HOM05D000108 ORTHO05D001781 1.7e-09 65.9 47 66.0
FAN12G3779 Fragaria x ananassa HOM05D000108 ORTHO05D001781 1.7e-09 65.9 47 66.0
FAN22G0161 Fragaria x ananassa HOM05D000108 ORTHO05D001781 1.7e-09 65.9 47 66.0
Lj6A347T39 Lonicera japonica HOM05D000108 ORTHO05D001781 1.7e-09 65.9 43 72.1
Ah.13g077770 Amaranthus hybridus HOM05D000108 ORTHO05D001781 2.3e-09 65.5 64 51.6
Lalb_Chr23g0278261 Lupinus albus HOM05D000108 ORTHO05D001781 2.3e-09 65.5 47 63.8
AagrBONN_evm.TU.Sc2ySwM_368.3193 Anthoceros agrestis HOM05D000108 ORTHO05D001781 3.0e-09 65.1 48 64.6
Duzib268G0673 Durio zibethinus HOM05D000108 ORTHO05D001781 3.9e-09 64.7 47 70.2
Sed0004792 Sechium edule HOM05D000108 ORTHO05D001781 3.9e-09 64.7 47 68.1
FAN17G2619 Fragaria x ananassa HOM05D000108 ORTHO05D001781 5.1e-09 64.3 47 63.8
HanXRQChr07g0185991 Helianthus annuus HOM05D000108 ORTHO05D001781 6.6e-09 63.9 64 53.1
AUR62018516 Chenopodium quinoa HOM05D000108 ORTHO05D001781 8.7e-09 63.5 47 63.8
AUR62020903 Chenopodium quinoa HOM05D000108 ORTHO05D001781 8.7e-09 63.5 47 63.8
Os04g0350300 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001781 8.7e-09 63.5 46 65.2
ECA233G2744 Erigeron canadensis HOM05D000108 ORTHO05D001781 1.5e-08 62.8 63 50.8
Pp3c17_5100 Physcomitrium patens HOM05D000108 ORTHO05D001781 1.9e-08 62.4 46 67.4
Lsat_1_v5_gn_1_69121 Lactuca sativa HOM05D000108 ORTHO05D001781 2.5e-08 62.0 64 53.1
CiPaw.02G062000 Carya illinoinensis HOM05D000108 ORTHO05D001781 3.3e-08 61.6 47 68.1
CDE10G0641 Ceratophyllum demersum HOM05D003645 ORTHO05D021199 4.3e-08 61.2 44 65.9
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 4.3e-08 61.2 44 65.9
Psat4g190920 Pisum sativum HOM05D000487 ORTHO05D001267 5.6e-08 60.8 40 65.0
COL.COLO4_09775 Corchorus olitorius HOM05D000108 ORTHO05D001781 2.1e-07 58.9 46 65.2
SHI30434 Sapria himalayana HOM05D000108 ORTHO05D001781 2.1e-07 58.9 62 50.0
Mapoly0001s0076 Marchantia polymorpha HOM05D000108 ORTHO05D001781 2.8e-07 58.5 64 53.1
SHI26499 Sapria himalayana HOM05D000108 ORTHO05D001781 3.6e-07 58.2 62 50.0
Os02g0489800 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001781 4.7e-07 57.8 47 59.6
SMO145G0141 Selaginella moellendorffii HOM05D000108 ORTHO05D001781 6.2e-07 57.4 45 60.0
SEGI_27921 Sequoiadendron giganteum HOM05D000108 ORTHO05D001781 8.1e-07 57.0 64 50.0
Thecc.07G023600 Theobroma cacao HOM05D000108 ORTHO05D001781 1.1e-06 56.6 46 63.0
HPP92_011789 Vanilla planifolia HOM05D000108 ORTHO05D001781 1.8e-06 55.8 46 58.7
Pp3c9_810 Physcomitrium patens HOM05D000108 ORTHO05D001781 3.1e-06 55.1 46 56.5
MSTRG.4273 Avicennia marina HOM05D000108 ORTHO05D001781 4.0e-06 54.7 47 61.7
SGA_v2.0_scaffold12G06123 Striga asiatica HOM05D000108 ORTHO05D001781 4.0e-06 54.7 47 61.7
CiPaw.11G200000 Carya illinoinensis HOM05D000108 ORTHO05D001781 5.2e-06 54.3 44 63.6
Gohir.A13G135300 Gossypium hirsutum HOM05D000108 ORTHO05D001781 5.2e-06 54.3 44 61.4
Actinidia05038 Actinidia chinensis HOM05D000108 ORTHO05D001781 6.9e-06 53.9 43 60.5
Duzib213G0023 Durio zibethinus HOM05D000108 ORTHO05D001781 6.9e-06 53.9 46 58.7
Nn1g03267 Nelumbo nucifera HOM05D000108 ORTHO05D001781 6.9e-06 53.9 49 53.1
TPR.G11836 Trifolium pratense HOM05D000108 ORTHO05D001781 6.9e-06 53.9 47 57.4
Glyma.02G296800 Glycine max HOM05D000108 ORTHO05D001781 9.0e-06 53.5 50 54.0
PSO675G5002 Papaver somniferum HOM05D000108 ORTHO05D001781 9.0e-06 53.5 44 61.4


User provided reference genes

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