Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0115900 Salix brachista HOM05D006545 ORTHO05D007985 3.3e-34 147.9 79 100.0
Potri.006G146800 Populus trichocarpa HOM05D006545 ORTHO05D007985 5.2e-32 140.6 79 94.9
Potri.004G215200 Populus trichocarpa HOM05D006545 ORTHO05D007985 1.3e-30 136.0 79 89.9
Manes.16G101800 Manihot esculenta HOM05D006545 ORTHO05D007985 1.1e-26 122.9 72 87.5
DCAR_028856 Daucus carota HOM05D006545 ORTHO05D007985 1.5e-26 122.5 72 88.9
DCAR_032235 Daucus carota HOM05D006545 ORTHO05D007985 1.5e-26 122.5 72 88.9
Dinv42321 Davidia involucrata HOM05D006545 ORTHO05D007985 2.5e-26 121.7 79 81.0
Nitab4.5_0008523g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 7.3e-26 120.2 79 81.0
Gohir.A05G030100 Gossypium hirsutum HOM05D006545 ORTHO05D007985 9.6e-26 119.8 79 78.5
Gohir.D05G031500 Gossypium hirsutum HOM05D006545 ORTHO05D007985 9.6e-26 119.8 79 78.5
Gorai.009G031700 Gossypium raimondii HOM05D006545 ORTHO05D007985 9.6e-26 119.8 79 78.5
Manes.03G034000 Manihot esculenta HOM05D006545 ORTHO05D007985 9.6e-26 119.8 73 84.9
Thecc.09G088900 Theobroma cacao HOM05D006545 ORTHO05D007985 9.6e-26 119.8 79 78.5
Cfa003081 Carpinus fangiana HOM05D000085 ORTHO05D001460 1.2e-25 119.4 72 86.1
unitig_85.g27258 Utricularia gibba HOM05D006545 ORTHO05D007985 1.2e-25 119.4 79 77.2
MSTRG.10562 Avicennia marina HOM05D006545 ORTHO05D007985 2.1e-25 118.6 79 77.2
vmacro06292 Vaccinium macrocarpon HOM05D006545 ORTHO05D007985 2.1e-25 118.6 79 78.5
Actinidia29903 Actinidia chinensis HOM05D000085 ORTHO05D001460 3.6e-25 117.9 79 77.2
Nitab4.5_0000540g0270 Nicotiana tabacum HOM05D006545 ORTHO05D007985 3.6e-25 117.9 79 78.5
Dinv36770 Davidia involucrata HOM05D006545 ORTHO05D007985 4.7e-25 117.5 79 78.5
Actinidia19138 Actinidia chinensis HOM05D006545 ORTHO05D007985 6.2e-25 117.1 79 77.2
Duzib168G1224 Durio zibethinus HOM05D006545 ORTHO05D007985 6.2e-25 117.1 79 77.2
Duzib150G0099 Durio zibethinus HOM05D006545 ORTHO05D007985 1.4e-24 115.9 79 77.2
ECA240G1755 Erigeron canadensis HOM05D006545 ORTHO05D007985 1.8e-24 115.5 77 74.0
Nn8g38862 Nelumbo nucifera HOM05D006545 ORTHO05D007985 1.8e-24 115.5 79 78.5
PGR102G1056 Punica granatum HOM05D006545 ORTHO05D007985 1.8e-24 115.5 72 81.9
Migut.L01494 Erythranthe guttata HOM05D006545 ORTHO05D007985 2.4e-24 115.2 79 73.4
CiPaw.04G149100 Carya illinoinensis HOM05D006545 ORTHO05D007985 3.1e-24 114.8 72 83.3
Cc06_g11430 Coffea canephora HOM05D006545 ORTHO05D007985 3.1e-24 114.8 79 74.7
Ciclev10010087m.g Citrus clementina HOM05D006545 ORTHO05D007985 4.0e-24 114.4 72 83.3
GSVIVG01015199001 Vitis vinifera HOM05D006545 ORTHO05D007985 4.0e-24 114.4 79 73.4
ClCG03G015590 Citrullus lanatus HOM05D006545 ORTHO05D007985 9.0e-24 113.2 72 76.4
Eucgr.C00895 Eucalyptus grandis HOM05D006545 ORTHO05D007985 9.0e-24 113.2 72 77.8
PGSC0003DMG400000279 Solanum tuberosum HOM05D006545 ORTHO05D007985 9.0e-24 113.2 79 75.9
MELO3C015473.2 Cucumis melo HOM05D006545 ORTHO05D007985 1.2e-23 112.8 72 77.8
CsaV3_1G040450 Cucumis sativus L. HOM05D006545 ORTHO05D007985 1.2e-23 112.8 72 77.8
HanXRQChr12g0363181 Helianthus annuus HOM05D006545 ORTHO05D007985 1.2e-23 112.8 79 73.4
Lsat_1_v5_gn_7_37040 Lactuca sativa HOM05D006545 ORTHO05D007985 1.2e-23 112.8 75 76.0
CiPaw.03G215100 Carya illinoinensis HOM05D006545 ORTHO05D007985 1.5e-23 112.5 72 81.9
Lj4g0002489 Lotus japonicus HOM05D006545 ORTHO05D007985 1.5e-23 112.5 72 80.6
Solyc12g008860.3 Solanum lycopersicum HOM05D006545 ORTHO05D007985 1.5e-23 112.5 79 74.7
Sopen12g003790 Solanum pennellii HOM05D006545 ORTHO05D007985 1.5e-23 112.5 79 74.7
Glyma.13G104200 Glycine max HOM05D006545 ORTHO05D007985 2.6e-23 111.7 72 79.2
Glyma.17G054900 Glycine max HOM05D006545 ORTHO05D007985 2.6e-23 111.7 72 79.2
QL02p062521 Quercus lobata HOM05D006545 ORTHO05D007985 2.6e-23 111.7 72 79.2
CANSAT56G1499 Cannabis sativa HOM05D006545 ORTHO05D007985 3.4e-23 111.3 72 79.2
CANSAT56G4473 Cannabis sativa HOM05D006545 ORTHO05D007985 3.4e-23 111.3 72 79.2
Os06g0567000 Oryza sativa ssp. japonica HOM05D006545 ORTHO05D007985 4.4e-23 110.9 75 76.0
unitig_699.g19296 Utricularia gibba HOM05D006545 ORTHO05D007985 4.4e-23 110.9 75 74.7
FvH4_1g07510 Fragaria vesca HOM05D006545 ORTHO05D007985 5.8e-23 110.5 72 79.2
FAN19G0384 Fragaria x ananassa HOM05D006545 ORTHO05D007985 5.8e-23 110.5 72 79.2
FAN23G2021 Fragaria x ananassa HOM05D006545 ORTHO05D007985 5.8e-23 110.5 72 79.2
FAN26G0590 Fragaria x ananassa HOM05D006545 ORTHO05D007985 5.8e-23 110.5 72 79.2
Phvul.003G136800 Phaseolus vulgaris HOM05D006545 ORTHO05D007985 5.8e-23 110.5 72 77.8
TAR383G1000 Trochodendron aralioides HOM05D006545 ORTHO05D007985 7.6e-23 110.2 75 76.0
Gohir.A13G193400 Gossypium hirsutum HOM05D006545 ORTHO05D007985 9.9e-23 109.8 79 73.4
PSO832G3375 Papaver somniferum HOM05D006545 ORTHO05D007985 9.9e-23 109.8 79 70.9
TWI34G0024 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 9.9e-23 109.8 72 81.9
MD02G1079700 Malus domestica HOM05D006545 ORTHO05D007985 1.3e-22 109.4 79 73.4
MBI04_g31162_MAGBIO Magnolia biondii HOM05D006545 ORTHO05D007985 1.7e-22 109.0 79 72.2
Sc18g0002090 Simmondsia chinensis HOM05D000085 ORTHO05D001460 1.7e-22 109.0 75 76.0
THA.LOC104814622 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 1.7e-22 109.0 75 76.0
MD15G1207400 Malus domestica HOM05D006545 ORTHO05D007985 2.2e-22 108.6 73 72.6
Prupe.7G209400 Prunus persica HOM05D006545 ORTHO05D007985 2.9e-22 108.2 72 80.6
Gohir.D13G199200 Gossypium hirsutum HOM05D006545 ORTHO05D007985 3.8e-22 107.8 79 72.2
THA.LOC104820022 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 3.8e-22 107.8 75 76.0
TWI63G0169 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 3.8e-22 107.8 72 80.6
Zm00001eb277360 Zea mays HOM05D006545 ORTHO05D007985 3.8e-22 107.8 74 74.3
CDE06G0764 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 4.9e-22 107.5 79 70.9
CDE07G1614 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 4.9e-22 107.5 79 70.9
EL10Ac8g19212 Beta vulgaris HOM05D006545 ORTHO05D007985 6.4e-22 107.1 79 72.2
Zm00001eb383910 Zea mays HOM05D006545 ORTHO05D007985 6.4e-22 107.1 75 73.3
PSO063G6244 Papaver somniferum HOM05D006545 ORTHO05D007985 1.1e-21 106.3 79 68.4
RcHm_v2.0_Chr2g0093401 Rosa chinensis HOM05D006545 ORTHO05D007985 1.1e-21 106.3 72 76.4
Psat4g015120 Pisum sativum HOM05D006545 ORTHO05D007985 1.4e-21 105.9 75 76.0
Gorai.013G227700 Gossypium raimondii HOM05D006545 ORTHO05D007985 1.9e-21 105.5 79 70.9
PSO210G4511 Papaver somniferum HOM05D006545 ORTHO05D007985 1.9e-21 105.5 79 70.9
Thhalv10026717m.g Eutrema salsugineum HOM05D006545 ORTHO05D007985 2.4e-21 105.1 75 73.3
Sp7g27510 Schrenkiella parvula HOM05D006545 ORTHO05D007985 2.4e-21 105.1 75 73.3
AL7G22570 Arabidopsis lyrata HOM05D006545 ORTHO05D007985 3.2e-21 104.8 75 73.3
Carub.0007s1077 Capsella rubella HOM05D006545 ORTHO05D007985 3.2e-21 104.8 75 73.3
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 3.2e-21 104.8 73 78.1
PSO210G2413 Papaver somniferum HOM05D006545 ORTHO05D007985 3.2e-21 104.8 79 70.9
CARHR237610 Cardamine hirsuta HOM05D006545 ORTHO05D007985 4.2e-21 104.4 75 73.3
Atru.chr7.1592 Acer truncatum HOM05D006545 ORTHO05D007985 5.4e-21 104.0 72 76.4
ATR0749G052 Amborella trichopoda HOM05D006545 ORTHO05D007985 5.4e-21 104.0 79 67.1
AUR62033964 Chenopodium quinoa HOM05D006545 ORTHO05D007985 5.4e-21 104.0 75 74.7
Aa31LG2G20830 Aethionema arabicum HOM05D006545 ORTHO05D007985 7.1e-21 103.6 75 72.0
AT4G29735 Arabidopsis thaliana HOM05D006545 ORTHO05D007985 7.1e-21 103.6 75 72.0
arahy.Tifrunner.gnm1.ann1.MQ59WG Arachis hypogaea HOM05D000085 ORTHO05D001460 7.1e-21 103.6 77 71.4
A03p59030 Brassica napus HOM05D006545 ORTHO05D007985 7.1e-21 103.6 79 70.9
Medtr4g126270 Medicago truncatula HOM05D000085 ORTHO05D001460 7.1e-21 103.6 73 74.0
arahy.Tifrunner.gnm1.ann1.CH1R66 Arachis hypogaea HOM05D006545 ORTHO05D007985 9.3e-21 103.2 73 75.3
arahy.Tifrunner.gnm1.ann1.S1CX09 Arachis hypogaea HOM05D006545 ORTHO05D007985 9.3e-21 103.2 73 75.3
Nitab4.5_0006552g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 9.3e-21 103.2 74 75.7
BcaNung00485 Brassica carinata HOM05D006545 ORTHO05D007985 1.2e-20 102.8 75 72.0
AUR62029070 Chenopodium quinoa HOM05D006545 ORTHO05D007985 1.2e-20 102.8 75 73.3
Nitab4.5_0004526g0070 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.2e-20 102.8 63 85.7
Sed0026852 Sechium edule HOM05D006545 ORTHO05D007985 2.7e-20 101.7 72 69.4
Ah.09g228260 Amaranthus hybridus HOM05D006545 ORTHO05D007985 4.6e-20 100.9 79 68.4
Aqoxy7G01208 Aquilegia oxysepala HOM05D006545 ORTHO05D007985 7.8e-20 100.1 77 68.8
Lalb_Chr13g0299701 Lupinus albus HOM05D006545 ORTHO05D007985 7.8e-20 100.1 79 68.4
Lalb_Chr07g0180851 Lupinus albus HOM05D006545 ORTHO05D007985 1.0e-19 99.8 79 69.6
A01p08390 Brassica napus HOM05D000125 ORTHO05D000120 2.3e-19 98.6 75 69.3
BraA01t00787Z Brassica rapa HOM05D000125 ORTHO05D000120 2.3e-19 98.6 75 69.3
C03p89150 Brassica napus HOM05D006545 ORTHO05D007985 3.0e-19 98.2 75 69.3
TPR.G9474 Trifolium pratense HOM05D000085 ORTHO05D001460 3.0e-19 98.2 70 72.9
BcaC01g01182 Brassica carinata HOM05D006545 ORTHO05D007985 8.7e-19 96.7 75 68.0
BcaC09g51752 Brassica carinata HOM05D006545 ORTHO05D007985 2.5e-18 95.1 75 70.7
SalBow5G5008 Salvia bowleyana HOM05D006545 ORTHO05D007985 2.1e-17 92.0 62 77.4
C07p57080 Brassica napus HOM05D006545 ORTHO05D007985 8.1e-17 90.1 63 74.6
BraA03t14963Z Brassica rapa HOM05D006545 ORTHO05D007985 8.1e-17 90.1 97 55.7
Mapoly0003s0235 Marchantia polymorpha HOM05D006545 ORTHO05D007985 1.4e-16 89.4 79 58.2
Nitab4.5_0004223g0010 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.4e-16 89.4 63 73.0
TAR624G0377 Trochodendron aralioides HOM05D002302 ORTHO05D002728 1.8e-16 89.0 64 73.4
BolC7t46179H Brassica oleracea HOM05D006545 ORTHO05D007985 2.4e-16 88.6 101 53.5
COL.COLO4_18197 Corchorus olitorius HOM05D002302 ORTHO05D002728 3.1e-16 88.2 68 67.6
HPP92_008778 Vanilla planifolia HOM05D006545 ORTHO05D007985 5.3e-16 87.4 56 75.0
BcaC09g52224 Brassica carinata HOM05D006545 ORTHO05D007985 1.2e-15 86.3 63 71.4
FAN26G2289 Fragaria x ananassa HOM05D006545 ORTHO05D007985 2.6e-15 85.1 58 72.4
HanXRQChr12g0377121 Helianthus annuus HOM05D006545 ORTHO05D007985 7.6e-15 83.6 56 76.8
Nitab4.5_0000095g0160 Nicotiana tabacum HOM05D006545 ORTHO05D007985 9.9e-15 83.2 74 60.8
C01p09720 Brassica napus HOM05D006545 ORTHO05D007985 2.9e-14 81.6 97 51.5
Pp3c11_23220 Physcomitrium patens HOM05D006545 ORTHO05D007985 4.9e-14 80.9 79 54.4
C01p09580 Brassica napus HOM05D000125 ORTHO05D007985 1.1e-13 79.7 63 69.8
SMO361G0088 Selaginella moellendorffii HOM05D006545 ORTHO05D007985 1.1e-13 79.7 75 54.7
Rhsim03G0232100 Rhododendron simsii HOM05D000004 ORTHO05D007985 3.5e-12 74.7 47 85.1
C01p09620 Brassica napus HOM05D006545 ORTHO05D007985 2.1e-09 65.5 95 48.4
Lj7C676T8 Lonicera japonica HOM05D006545 ORTHO05D007985 3.7e-09 64.7 37 89.2
A08p19550 Brassica napus HOM05D006545 ORTHO05D007985 1.1e-08 63.2 46 71.7
BcaB03g12615 Brassica carinata HOM05D006545 ORTHO05D007985 9.0e-08 60.1 47 61.7
Actinidia25251 Actinidia chinensis HOM05D006545 ORTHO05D007985 4.5e-07 57.8 46 76.1


User provided reference genes

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