Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 4.0e-202 708.0 388 100.0
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 1.5e-180 636.3 389 83.8
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 2.1e-174 615.9 382 88.2
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 3.3e-172 608.6 407 84.0
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 3.7e-163 578.6 389 80.2
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 2.6e-161 572.4 378 83.9
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 1.5e-159 566.6 377 81.4
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 4.7e-158 561.6 392 78.1
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 6.1e-158 561.2 389 78.9
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 4.0e-157 558.5 376 81.1
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 3.3e-156 555.4 389 81.0
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 7.5e-156 554.3 385 76.9
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.3e-155 553.5 388 77.3
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 2.8e-155 552.4 388 77.3
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.4e-154 549.3 388 76.8
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 4.1e-154 548.5 370 80.8
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.6e-153 546.6 359 81.9
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 1.6e-153 546.6 375 79.2
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 3.5e-153 545.4 382 78.0
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 3.5e-153 545.4 390 76.9
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 3.5e-153 545.4 384 74.0
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 4.5e-153 545.0 371 79.5
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 5.9e-153 544.7 387 77.3
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 7.7e-153 544.3 384 73.4
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 1.7e-152 543.1 367 78.7
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 3.8e-152 542.0 363 80.4
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 3.8e-152 542.0 363 80.4
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 6.5e-152 541.2 376 77.4
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 6.5e-152 541.2 309 87.4
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 6.5e-152 541.2 366 82.2
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 6.5e-152 541.2 366 81.7
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 6.5e-152 541.2 366 82.2
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 8.5e-152 540.8 366 80.1
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 2.5e-151 539.3 365 79.2
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 2.5e-151 539.3 310 87.1
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 2.5e-151 539.3 384 76.0
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 2.5e-151 539.3 366 81.7
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 3.2e-151 538.9 383 74.4
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 7.2e-151 537.7 366 76.8
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 9.4e-151 537.3 367 77.4
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 1.2e-150 537.0 388 77.8
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 1.2e-150 537.0 331 81.3
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 2.1e-150 536.2 365 78.6
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 2.1e-150 536.2 331 81.0
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 2.1e-150 536.2 374 77.0
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 2.1e-150 536.2 374 77.0
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 2.7e-150 535.8 366 79.2
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 3.6e-150 535.4 370 76.2
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 4.7e-150 535.0 390 71.3
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 6.1e-150 534.6 383 78.1
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 8.0e-150 534.3 378 77.0
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 1.0e-149 533.9 379 77.0
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 1.0e-149 533.9 353 81.3
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 1.8e-149 533.1 369 78.6
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.8e-149 533.1 370 77.6
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 1.8e-149 533.1 334 80.2
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 2.3e-149 532.7 367 79.6
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 4.0e-149 531.9 375 72.8
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 5.2e-149 531.6 386 72.5
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.2e-148 530.4 366 78.1
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 1.5e-148 530.0 364 78.0
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.0e-148 529.6 369 77.8
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 2.0e-148 529.6 312 84.9
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 2.6e-148 529.3 393 73.8
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.4e-148 528.9 312 84.6
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 4.4e-148 528.5 377 78.5
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 7.5e-148 527.7 368 76.4
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.7e-147 526.6 312 84.6
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 2.8e-147 525.8 380 75.3
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 2.8e-147 525.8 370 76.8
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.8e-147 525.8 370 76.8
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 4.8e-147 525.0 366 77.6
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 4.8e-147 525.0 314 82.8
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 6.3e-147 524.6 319 80.6
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 6.3e-147 524.6 369 73.7
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.4e-146 523.5 387 71.1
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 3.1e-146 522.3 313 83.1
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 4.1e-146 521.9 384 72.1
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.2e-145 520.4 377 72.7
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.6e-145 520.0 384 70.3
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 2.0e-145 519.6 359 73.8
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.7e-145 519.2 372 78.5
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 2.7e-145 519.2 335 78.8
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 7.7e-145 517.7 389 68.6
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.3e-144 516.9 383 77.8
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 1.3e-144 516.9 313 81.8
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.3e-144 516.9 373 75.1
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 1.7e-144 516.5 312 81.4
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 2.3e-144 516.2 366 73.2
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 2.3e-144 516.2 381 73.8
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 5.0e-144 515.0 318 80.2
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 5.0e-144 515.0 374 71.4
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 6.6e-144 514.6 374 71.1
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 8.6e-144 514.2 363 75.8
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 1.5e-143 513.5 312 81.1
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.9e-143 513.1 384 76.8
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 1.9e-143 513.1 384 69.0
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 7.2e-143 511.1 318 78.3
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 9.5e-143 510.8 368 71.7
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 1.2e-142 510.4 312 81.1
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 1.2e-142 510.4 408 69.4
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 2.1e-142 509.6 332 77.1
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 2.8e-142 509.2 371 70.9
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 3.6e-142 508.8 374 73.5
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 8.0e-142 507.7 384 68.8
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 8.0e-142 507.7 379 68.6
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 1.0e-141 507.3 369 71.8
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 1.5e-140 503.4 312 79.8
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 2.6e-140 502.7 373 72.9
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 7.5e-140 501.1 369 70.2
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 2.2e-139 499.6 306 79.1
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 3.7e-139 498.8 313 78.6
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 1.8e-138 496.5 474 61.4
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 2.4e-138 496.1 311 77.8
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 3.1e-138 495.7 322 75.2
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 4.1e-138 495.4 294 82.0
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 2.3e-136 489.6 313 77.6
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 2.9e-136 489.2 322 75.8
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 3.8e-136 488.8 287 82.9
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 1.5e-135 486.9 398 64.6
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 5.2e-133 478.4 311 76.2
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 5.2e-133 478.4 374 70.1
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 2.6e-132 476.1 384 72.4
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.1e-130 470.7 305 75.1
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 2.4e-130 469.5 270 82.6
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 4.6e-129 465.3 332 74.4
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 3.0e-128 462.6 349 74.5
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 3.9e-128 462.2 384 68.8
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 3.6e-126 455.7 380 68.4
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 1.5e-124 450.3 323 73.1
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 9.8e-124 447.6 271 80.1
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 1.9e-122 443.4 338 67.5
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 7.0e-122 441.4 328 64.3
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 1.6e-121 440.3 293 81.9
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 4.3e-119 432.2 401 60.3
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 4.7e-118 428.7 354 66.9
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 5.8e-116 421.8 302 67.9
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 3.7e-115 419.1 299 67.2
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.1e-114 417.5 314 65.3
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.6e-113 413.7 331 61.6
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 2.1e-113 413.3 241 83.4
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 6.0e-113 411.8 370 61.9
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 6.0e-113 411.8 299 64.9
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 2.0e-108 396.7 330 60.0
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 7.6e-108 394.8 222 87.8
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 7.1e-106 388.3 373 58.2
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 9.2e-106 387.9 368 65.2
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 2.7e-105 386.3 323 61.9
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 9.3e-98 361.3 239 77.0
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 3.3e-87 326.2 301 55.8
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 4.6e-81 305.8 212 68.9
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 1.0e-80 304.7 249 67.5
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 1.5e-63 247.7 151 80.8
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 4.3e-63 246.1 314 48.4
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 7.9e-57 225.3 190 61.6
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 8.8e-48 195.3 127 70.9
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 1.7e-43 181.0 181 55.2
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 2.5e-34 150.6 95 78.9
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 4.1e-29 133.3 308 30.2
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 5.4e-29 132.9 100 67.0
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 1.6e-25 121.3 369 27.4
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 2.0e-23 114.4 289 27.7
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.4e-21 107.5 250 33.6
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 1.2e-20 105.1 65 75.4
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 2.9e-19 100.5 81 66.7
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 3.9e-19 100.1 67 76.1
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 3.9e-19 100.1 67 76.1
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 8.6e-19 99.0 67 76.1
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.6e-17 94.7 396 26.0
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 2.0e-15 87.8 59 71.2
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 3.2e-13 80.5 90 66.7
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 1.6e-12 78.2 91 65.9
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 1.7e-11 74.7 108 36.1
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 6.2e-09 66.2 33 90.9
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 4.0e-08 63.5 41 73.2
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 6.8e-08 62.8 41 70.7
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 1.2e-07 62.0 39 74.4
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 4.4e-07 60.1 35 77.1


User provided reference genes

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