Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1799.6 869 100.0
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1690.2 869 94.5
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1455.3 868 80.2
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1391.7 868 76.7
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1380.9 868 76.6
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1373.2 867 75.7
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1370.5 868 75.8
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1359.0 869 74.8
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1359.0 868 75.2
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1357.8 868 75.2
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1354.3 868 75.1
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1350.1 867 75.0
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1350.1 867 74.6
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1349.3 868 74.5
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1347.8 867 74.2
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1337.0 874 73.6
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1334.7 869 74.1
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1331.2 867 73.5
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1328.5 867 73.4
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1327.4 867 72.9
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1325.8 868 74.0
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1321.2 868 73.8
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1320.8 871 72.3
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1317.8 863 73.9
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1317.8 876 73.1
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1317.4 862 73.5
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1308.5 869 72.7
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1308.1 868 73.8
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1307.0 869 71.9
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1306.6 868 73.3
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1306.2 879 71.4
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1305.8 869 72.7
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1303.9 867 71.9
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1302.0 869 72.3
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1299.6 870 72.0
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1298.9 869 72.0
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1298.9 869 72.2
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1298.5 873 71.4
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1298.1 868 72.7
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1298.1 871 71.3
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1296.2 868 71.1
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1296.2 872 70.9
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1295.8 869 71.8
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1295.8 868 72.4
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1291.9 867 71.7
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1291.6 868 70.9
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1290.8 869 70.7
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1290.0 870 71.5
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1288.9 870 72.0
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1286.6 867 71.4
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1286.2 868 71.0
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1285.8 864 70.6
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1284.6 870 71.5
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1283.5 870 71.4
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1283.1 863 70.7
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1281.9 868 70.5
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1278.1 867 71.0
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1277.7 869 69.9
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1275.8 867 70.5
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1275.4 867 70.5
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1274.2 867 70.4
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1272.7 890 69.1
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1272.3 871 70.3
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1267.7 866 69.6
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1265.4 868 70.3
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1265.0 866 69.3
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1264.6 867 69.8
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1263.1 868 70.2
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1260.4 871 69.7
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1258.4 866 68.5
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1257.3 870 69.1
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1256.9 866 69.7
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1255.7 873 68.4
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1255.4 878 68.6
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1251.1 869 68.7
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1250.3 870 68.7
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1248.0 865 68.7
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1247.6 863 69.3
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1240.3 867 68.4
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1238.4 869 68.8
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1238.0 869 68.8
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1234.9 868 69.2
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1230.3 880 67.5
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1229.9 867 69.8
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1227.6 888 67.2
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 869 67.5
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1220.7 869 67.8
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1211.8 829 71.0
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1181.8 872 65.0
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1156.7 854 64.9
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1154.4 745 76.4
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 0.0e+00 1094.0 691 74.7
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 0.0e+00 1092.4 647 79.6
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 0.0e+00 1080.9 866 62.9
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 0.0e+00 1078.9 869 59.6
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.6e-307 1059.3 863 61.2
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 5.1e-306 1054.3 692 72.7
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 1.8e-290 1002.7 864 55.1
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.2e-286 989.9 869 54.7
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 2.3e-282 975.7 867 54.8
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 8.9e-274 947.2 871 52.0
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 2.7e-198 696.4 782 46.0
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 1.5e-164 584.3 478 60.5
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.7e-164 582.4 388 72.4
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.6e-142 511.1 471 54.1
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.8e-125 454.5 366 60.7
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 9.0e-101 372.5 308 62.7
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 7.9e-73 279.6 204 65.7
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.2e-68 265.8 168 73.2
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 5.2e-56 223.8 175 64.6
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 3.2e-50 204.5 177 55.9
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 1.3e-43 182.6 194 54.1
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 5.7e-39 167.2 216 44.4
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 4.3e-34 151.0 118 64.4
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 1.4e-32 146.0 149 48.3
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.7e-30 137.9 83 77.1
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 3.6e-25 121.3 87 70.1
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 4.7e-25 120.9 90 67.8
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 2.0e-23 115.5 69 76.8
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 2.0e-23 115.5 106 58.5
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 5.4e-21 107.5 73 68.5
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 7.6e-15 87.0 274 25.9
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 1.6e-12 79.3 94 43.6
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 2.1e-12 79.0 64 57.8
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 2.7e-12 78.6 306 24.8
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 6.0e-12 77.4 329 24.0
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.0e-11 76.6 240 25.4
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.0e-11 75.1 326 23.6
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 4.3e-10 71.2 297 23.6
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 9.6e-10 70.1 88 46.6
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 4.7e-09 67.8 322 25.2
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 8.1e-09 67.0 33 84.8
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.1e-08 66.6 252 23.0
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.8e-08 65.9 250 25.2
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 2.4e-08 65.5 302 20.9
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 6.9e-08 63.9 303 27.1
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 7.6e-07 60.5 218 28.4
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.7e-06 59.3 296 23.3
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.9e-06 58.5 213 22.5
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 2.9e-06 58.5 202 25.2


User provided reference genes

Program Settings