Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 1.8e-131 473.8 546 100.0
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 2.1e-116 423.7 546 95.6
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 9.1e-75 285.4 206 68.0
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 8.3e-60 235.7 225 56.4
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 1.1e-56 225.3 200 58.5
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 7.2e-56 222.6 216 54.2
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 7.2e-56 222.6 220 54.5
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 2.8e-55 220.7 215 54.4
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 2.8e-55 220.7 225 54.7
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 4.7e-55 219.9 220 54.1
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 1.4e-54 218.4 225 53.3
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 5.2e-54 216.5 219 53.9
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 4.4e-53 213.4 225 53.3
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 5.7e-53 213.0 215 52.6
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 1.7e-52 211.5 207 53.1
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 1.7e-52 211.5 222 50.9
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 2.8e-52 210.7 213 49.8
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 3.1e-51 207.2 208 53.8
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 7.0e-51 206.1 225 51.1
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 2.0e-50 204.5 225 49.3
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 2.1e-47 194.5 198 49.5
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 3.4e-45 187.2 219 46.1
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 2.2e-44 184.5 201 48.8
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 6.4e-44 183.0 207 44.0
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 8.3e-44 182.6 238 46.6
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 7.0e-43 179.5 187 51.9
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 7.0e-43 179.5 187 51.9
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 4.6e-42 176.8 185 49.7
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 7.8e-42 176.0 213 47.9
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 1.3e-41 175.3 230 43.9
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 2.3e-41 174.5 206 46.6
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 2.3e-41 174.5 206 46.6
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 3.0e-41 174.1 184 50.5
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 5.0e-41 173.3 183 45.4
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 6.6e-41 172.9 209 47.8
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 8.6e-41 172.6 209 47.8
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 1.1e-40 172.2 206 46.1
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.1e-40 172.2 227 44.1
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 1.9e-40 171.4 147 60.5
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 2.5e-40 171.0 154 57.8
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 2.5e-40 171.0 191 49.7
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 3.3e-40 170.6 201 44.3
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 4.3e-40 170.2 175 48.6
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 5.6e-40 169.9 154 57.1
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 7.3e-40 169.5 208 46.6
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 9.5e-40 169.1 208 47.1
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.6e-39 168.3 210 42.9
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 2.1e-39 167.9 213 43.2
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 2.8e-39 167.5 184 45.1
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 2.8e-39 167.5 136 57.4
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 4.7e-39 166.8 151 58.3
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 4.7e-39 166.8 210 45.7
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 6.2e-39 166.4 182 42.9
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 8.0e-39 166.0 220 43.6
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.1e-38 165.6 226 44.7
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 1.1e-38 165.6 201 42.8
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.8e-38 164.9 219 44.3
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 2.3e-38 164.5 212 41.0
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 4.0e-38 163.7 184 47.8
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 5.2e-38 163.3 207 44.4
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 5.2e-38 163.3 218 43.1
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 5.2e-38 163.3 183 48.6
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 6.8e-38 162.9 204 43.6
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 8.9e-38 162.5 191 43.5
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 8.9e-38 162.5 183 42.1
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 7.5e-37 159.5 184 43.5
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 7.5e-37 159.5 184 41.8
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 1.3e-36 158.7 147 55.1
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 3.7e-36 157.1 212 44.3
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 6.4e-36 156.4 183 41.5
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 6.4e-36 156.4 183 43.2
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 8.3e-36 156.0 204 43.1
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 1.1e-35 155.6 227 41.4
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 1.9e-35 154.8 151 52.3
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 1.9e-35 154.8 152 52.0
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 7.0e-35 152.9 182 43.4
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 1.2e-34 152.1 223 39.0
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 1.6e-34 151.8 189 41.8
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 2.1e-34 151.4 146 54.1
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 3.5e-34 150.6 148 54.1
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 4.6e-34 150.2 140 53.6
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 4.6e-34 150.2 138 53.6
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 6.0e-34 149.8 152 53.9
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 6.0e-34 149.8 191 43.5
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 2.3e-33 147.9 191 40.3
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 3.0e-33 147.5 148 53.4
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.5e-32 145.2 223 40.8
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 4.3e-32 143.7 223 40.8
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 7.3e-32 142.9 223 41.7
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 9.5e-32 142.5 222 41.9
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 1.2e-31 142.1 190 41.1
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 2.1e-31 141.4 210 39.0
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 2.1e-31 141.4 223 41.7
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 6.2e-31 139.8 154 44.2
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 8.1e-31 139.4 224 39.7
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 1.8e-30 138.3 223 43.0
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 4.0e-30 137.1 218 39.9
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 4.0e-30 137.1 223 37.2
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 8.9e-30 136.0 192 43.2
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.3e-28 132.1 154 44.2
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 2.2e-28 131.3 188 39.4
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 1.4e-27 128.6 223 41.3
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 3.2e-27 127.5 98 60.2
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 7.1e-27 126.3 214 38.8
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 1.2e-26 125.6 140 43.6
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 2.1e-26 124.8 189 39.2
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 1.0e-25 122.5 181 37.0
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.3e-25 122.1 223 35.9
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.3e-25 122.1 223 35.9
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 2.3e-25 121.3 185 41.6
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 6.6e-25 119.8 148 41.2
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 1.9e-24 118.2 110 50.0
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 2.1e-23 114.8 102 52.9
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 8.1e-23 112.8 182 36.3
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 6.4e-20 103.2 130 39.2
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 6.6e-17 93.2 162 37.7
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 2.4e-11 74.7 109 41.3
Gohir.A05G033900 Gossypium hirsutum HOM05D006080 ORTHO05D007382 7.8e-10 69.7 62 53.2
Gohir.D05G035300 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.3e-09 68.9 62 53.2
Eucgr.C00807 Eucalyptus grandis HOM05D006080 ORTHO05D007382 3.3e-08 64.3 50 64.0
Hma1.2p1_3105F.1_g332750 Hydrangea macrophylla HOM05D006080 ORTHO05D007382 2.8e-07 61.2 112 36.6
Atru.chr7.1704 Acer truncatum HOM05D006080 ORTHO05D007382 2.4e-06 58.2 48 62.5
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 3.1e-06 57.8 133 25.6
Ca_14668_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 6.9e-06 56.6 65 41.5
Psat7g154760 Pisum sativum HOM05D006080 ORTHO05D007382 6.9e-06 56.6 65 46.2
Os04g0446100 Oryza sativa ssp. japonica HOM05D006080 ORTHO05D007382 9.0e-06 56.2 107 29.9
Psat5g085120 Pisum sativum HOM05D000424 ORTHO05D000355 9.0e-06 56.2 163 26.4


User provided reference genes

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