Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 7.8e-172 607.1 311 100.0
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 8.3e-158 560.5 314 92.7
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 4.2e-109 398.7 321 67.9
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 3.7e-105 385.6 314 67.2
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 1.1e-104 384.0 312 66.3
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 1.0e-102 377.5 314 66.2
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 8.5e-102 374.4 317 65.0
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 8.5e-102 374.4 316 63.0
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 1.4e-101 373.6 321 65.4
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 4.2e-101 372.1 316 64.2
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 1.2e-100 370.5 316 63.9
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 4.7e-100 368.6 320 63.8
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 1.0e-99 367.5 314 65.0
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 3.9e-99 365.5 319 63.0
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 1.5e-98 363.6 215 81.4
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 2.6e-98 362.8 314 64.3
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 7.4e-98 361.3 314 64.6
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 9.7e-98 360.9 316 63.9
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 9.7e-98 360.9 315 63.8
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 1.3e-97 360.5 309 63.1
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.3e-97 360.5 316 63.9
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 2.8e-97 359.4 312 62.2
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 2.8e-97 359.4 315 62.5
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 3.7e-97 359.0 309 63.4
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 3.7e-97 359.0 310 62.6
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 3.7e-97 359.0 232 78.0
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 6.3e-97 358.2 310 63.2
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 8.2e-97 357.8 315 62.9
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 8.2e-97 357.8 315 62.9
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.1e-96 357.5 316 63.3
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 1.8e-96 356.7 320 62.8
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 1.8e-96 356.7 315 64.1
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 2.4e-96 356.3 311 62.7
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 3.1e-96 355.9 279 66.7
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 7.0e-96 354.8 309 62.5
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 2.0e-95 353.2 312 61.2
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 3.5e-95 352.4 312 60.9
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 4.5e-95 352.1 309 61.8
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 4.5e-95 352.1 316 61.4
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 4.5e-95 352.1 313 61.7
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 5.9e-95 351.7 315 61.6
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 7.7e-95 351.3 315 61.3
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 1.3e-94 350.5 221 76.0
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 1.3e-94 350.5 322 61.5
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 1.7e-94 350.1 239 69.9
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 2.9e-94 349.4 242 71.1
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 3.8e-94 349.0 309 58.9
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 5.0e-94 348.6 310 61.0
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 6.5e-94 348.2 204 82.8
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 1.1e-93 347.4 316 60.8
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 1.1e-93 347.4 228 72.8
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 2.5e-93 346.3 227 71.4
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 2.5e-93 346.3 312 61.9
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 2.5e-93 346.3 315 62.2
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 5.5e-93 345.1 245 71.0
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 7.2e-93 344.7 312 60.9
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 9.4e-93 344.4 316 60.1
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 1.6e-92 343.6 319 60.5
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 1.6e-92 343.6 232 72.0
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 2.1e-92 343.2 238 72.3
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.1e-92 343.2 317 58.4
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 2.7e-92 342.8 319 59.9
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 3.6e-92 342.4 247 69.2
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 4.7e-92 342.0 232 72.8
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 6.1e-92 341.7 219 75.3
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 8.0e-92 341.3 234 72.6
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 1.4e-91 340.5 244 69.7
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.4e-91 340.5 315 59.7
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.8e-91 340.1 265 64.9
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 2.3e-91 339.7 289 65.4
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 3.0e-91 339.3 313 60.4
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 5.2e-91 338.6 248 65.3
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 5.2e-91 338.6 311 60.1
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 5.2e-91 338.6 312 59.0
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 6.7e-91 338.2 315 61.6
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 6.7e-91 338.2 312 60.3
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 8.8e-91 337.8 214 76.2
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 1.1e-90 337.4 312 59.0
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 2.6e-90 336.3 317 58.7
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 3.3e-90 335.9 214 75.7
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 4.4e-90 335.5 315 59.0
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 4.4e-90 335.5 247 68.4
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 5.7e-90 335.1 340 55.3
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 9.7e-90 334.3 218 74.8
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 1.7e-89 333.6 315 61.0
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 4.8e-89 332.0 245 67.8
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 1.8e-88 330.1 311 60.8
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 5.3e-88 328.6 340 55.3
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 2.0e-87 326.6 335 53.7
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 1.0e-86 324.3 314 57.6
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 1.3e-86 323.9 336 56.0
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 2.9e-86 322.8 223 71.7
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 3.8e-86 322.4 225 68.4
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 6.5e-86 321.6 316 58.2
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 8.5e-86 321.2 324 54.9
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 1.5e-85 320.5 217 72.4
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 4.2e-85 318.9 266 60.9
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 8.0e-84 314.7 321 54.2
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 3.0e-83 312.8 293 59.7
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 4.0e-83 312.4 211 71.1
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 2.0e-82 310.1 316 56.6
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 2.2e-81 306.6 198 73.2
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 2.2e-81 306.6 287 58.9
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 2.8e-81 306.2 267 59.6
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 3.1e-80 302.8 302 58.6
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 9.1e-80 301.2 303 57.8
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 5.0e-78 295.4 247 64.4
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 1.5e-77 293.9 262 57.6
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 1.5e-77 293.9 250 57.6
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 1.8e-75 287.0 241 58.5
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 1.7e-70 270.4 335 51.6
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.6e-66 256.5 277 52.7
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 1.7e-65 253.8 212 54.7
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 1.7e-65 253.8 258 57.0
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 2.7e-63 246.5 201 61.2
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 3.6e-60 236.1 237 50.2
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 8.0e-60 235.0 187 65.2
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 1.5e-58 230.7 235 49.4
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 1.1e-56 224.6 191 61.8
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 2.7e-47 193.4 184 54.9
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 6.6e-46 188.7 144 65.3
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 4.4e-42 176.0 109 74.3
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 8.6e-38 161.8 161 49.1
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 2.1e-36 157.1 214 44.9
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 2.4e-32 143.7 83 80.7
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 3.2e-32 143.3 83 81.9
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 3.9e-30 136.3 122 58.2
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 2.1e-28 130.6 203 35.0
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 3.1e-27 126.7 77 76.6
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 4.0e-27 126.3 125 50.4
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 1.2e-26 124.8 68 85.3
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 6.4e-25 119.0 150 38.0
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 3.0e-22 110.2 199 30.2
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 7.6e-18 95.5 123 48.8
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 2.1e-15 87.4 102 51.0
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 1.0e-14 85.1 113 45.1
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 5.8e-10 69.3 83 48.2
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.7e-09 67.8 96 46.9
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 1.7e-09 67.8 140 37.1
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 2.2e-09 67.4 37 86.5
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 2.5e-08 63.9 35 85.7
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 2.1e-07 60.8 86 45.3
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 3.9e-06 56.6 31 80.6


User provided reference genes

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