Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1512.3 748 100.0
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1164.1 681 85.9
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1083.2 681 80.5
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 1.0e-311 1072.8 681 80.0
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 1.0e-286 989.9 683 74.4
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 1.8e-283 979.2 682 72.6
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 2.1e-276 955.7 681 72.8
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 8.4e-273 943.7 682 71.6
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.3e-270 936.4 683 71.4
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 3.7e-268 928.3 681 70.5
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 4.8e-268 927.9 682 70.7
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 1.1e-267 926.8 681 71.1
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 1.1e-267 926.8 681 70.8
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 4.1e-267 924.9 685 70.5
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 1.0e-265 920.2 686 70.1
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.9e-264 916.0 681 70.5
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.2e-264 914.8 681 70.3
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 2.6e-258 895.6 682 68.5
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.9e-258 894.4 680 69.1
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 5.9e-258 894.4 681 69.2
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 5.9e-258 894.4 708 66.9
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 2.2e-257 892.5 684 69.2
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 2.9e-257 892.1 681 69.2
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.5e-257 890.6 681 69.6
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.5e-256 889.0 708 66.4
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.1e-255 885.9 681 68.1
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 6.1e-255 884.4 679 68.6
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 4.3e-253 878.2 707 65.3
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 7.7e-250 867.5 689 66.0
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 2.3e-246 855.9 709 64.7
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 7.4e-245 850.9 717 64.7
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.1e-243 844.0 681 66.4
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.0e-238 830.5 709 63.2
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.0e-238 830.5 709 63.2
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.4e-238 830.1 703 63.0
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.3e-238 829.3 709 62.9
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.3e-238 829.3 681 65.8
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 6.7e-238 827.8 706 62.3
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 6.7e-238 827.8 700 62.1
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 1.1e-237 827.0 700 62.1
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 1.5e-237 826.6 878 55.1
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 2.0e-237 826.2 684 63.6
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 3.3e-237 825.5 705 62.4
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 7.5e-237 824.3 684 63.2
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 9.7e-237 823.9 684 63.6
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 1.7e-236 823.2 683 63.1
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 1.7e-236 823.2 720 61.1
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 2.2e-236 822.8 682 62.8
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 4.8e-236 821.6 707 62.4
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 8.2e-236 820.8 641 68.0
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.1e-235 820.5 702 63.0
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 2.4e-235 819.3 701 61.5
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 3.1e-235 818.9 708 61.4
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.6e-234 816.6 701 61.1
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 2.7e-234 815.8 704 62.4
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 4.5e-234 815.1 696 62.5
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 7.7e-234 814.3 704 62.4
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.0e-233 813.9 682 62.3
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 1.3e-233 813.5 705 62.3
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 2.2e-233 812.8 682 62.0
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 5.0e-233 811.6 682 61.9
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 8.5e-233 810.8 684 62.3
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 1.1e-232 810.4 682 62.2
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 1.5e-232 810.1 685 62.3
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 4.2e-232 808.5 707 61.1
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 5.5e-232 808.1 682 61.9
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 5.5e-232 808.1 703 61.5
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 9.4e-232 807.4 703 62.3
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 8.0e-231 804.3 678 64.0
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 2.3e-230 802.7 684 62.4
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 2.3e-230 802.7 685 61.5
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 3.0e-230 802.4 684 61.1
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 5.2e-230 801.6 683 62.2
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 2.0e-229 799.7 686 61.1
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 3.4e-229 798.9 685 61.0
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 3.4e-229 798.9 706 60.3
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 3.4e-229 798.9 701 61.8
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 1.7e-228 796.6 699 61.7
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 4.8e-228 795.0 707 60.1
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 8.3e-228 794.3 661 62.5
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 8.3e-228 794.3 759 56.9
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 8.3e-228 794.3 681 60.9
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 3.1e-227 792.3 688 60.6
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 5.4e-227 791.6 707 60.7
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 4.5e-226 788.5 707 59.8
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.9e-225 785.8 684 61.8
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 8.5e-225 784.3 707 59.8
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 3.2e-224 782.3 707 59.7
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.2e-224 782.3 707 59.7
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 6.1e-223 778.1 707 59.1
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 6.1e-223 778.1 704 59.4
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 2.0e-221 773.1 707 58.7
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 8.3e-220 767.7 686 60.5
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 4.1e-219 765.4 706 58.2
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 2.7e-218 762.7 704 58.2
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 2.9e-217 759.2 709 56.7
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 2.9e-217 759.2 709 56.7
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.9e-216 756.5 730 57.9
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 4.3e-216 755.4 710 57.5
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.3e-212 743.8 708 56.4
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.3e-212 743.8 710 56.1
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 1.1e-211 740.7 705 56.5
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 7.0e-211 738.0 709 57.1
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 9.2e-211 737.6 709 56.1
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.7e-210 736.1 709 56.7
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.0e-209 734.2 709 55.6
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 3.0e-209 732.6 706 54.8
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 3.0e-209 732.6 708 56.2
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 8.6e-209 731.1 718 55.6
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.1e-208 730.7 713 54.7
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.5e-208 730.3 697 58.1
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.9e-208 729.9 706 54.5
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.9e-208 729.9 695 56.1
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 7.3e-208 728.0 657 59.8
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.2e-207 727.2 739 54.1
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 2.1e-207 726.5 712 55.3
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 1.4e-206 723.8 699 55.2
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 2.3e-206 723.0 708 54.9
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.3e-204 717.2 708 54.7
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 2.4e-203 713.0 708 55.1
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 3.2e-203 712.6 668 57.0
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 3.5e-202 709.1 652 58.3
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 6.0e-202 708.4 706 53.7
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 3.0e-201 706.1 709 54.9
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.4e-198 697.2 709 54.4
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 3.1e-198 696.0 696 57.2
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 3.4e-197 692.6 686 57.7
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.7e-196 690.3 692 54.3
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 2.2e-196 689.9 711 53.6
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.0e-193 681.0 686 55.1
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.0e-193 681.0 689 52.7
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 3.0e-193 679.5 686 55.1
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.2e-191 674.1 692 53.9
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 7.1e-187 658.3 702 52.6
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.9e-184 650.2 695 51.9
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 6.4e-180 635.2 697 50.4
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.9e-176 623.6 709 50.6
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 2.7e-162 576.6 706 47.0
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 3.9e-145 519.6 410 68.5
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.5e-144 516.9 386 68.4
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 4.1e-134 483.0 741 39.8
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 6.1e-122 442.6 660 41.4
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.0e-120 437.6 701 38.8
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 5.7e-120 436.0 680 39.6
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 9.7e-120 435.3 704 38.2
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 5.3e-118 429.5 711 39.4
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.8e-113 414.5 329 62.9
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.8e-113 414.5 329 62.9
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.7e-111 407.9 720 36.2
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 2.0e-109 401.0 216 88.0
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.1e-106 391.0 355 59.7
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.7e-95 353.6 459 46.2
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.4e-86 325.1 549 37.2
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.6e-82 311.6 449 41.9
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.1e-82 311.2 193 78.8
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 3.6e-82 310.5 788 31.6
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.5e-64 251.9 225 56.9
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.1e-54 219.2 237 49.4
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.3e-47 195.7 180 59.4
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 4.8e-42 177.2 141 59.6
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 4.5e-40 170.6 723 27.2
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.7e-39 168.7 149 63.1
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.7e-15 89.0 99 41.4
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.7e-15 89.0 90 43.3
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 1.8e-12 79.0 103 41.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 2.0e-11 75.5 63 58.7
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 7.4e-11 73.6 73 52.1
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 4.8e-10 70.9 96 43.8
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.8e-09 68.9 56 55.4


User provided reference genes

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