Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 3.3e-267 924.5 470 100.0
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 4.0e-244 847.8 470 92.6
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 6.4e-218 760.8 472 83.5
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 7.6e-187 657.5 611 61.0
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 1.3e-183 646.7 481 71.5
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 1.3e-178 630.2 476 70.8
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 6.2e-173 611.3 484 66.5
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 3.5e-168 595.5 479 64.9
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.8e-167 593.2 471 65.4
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 1.5e-163 580.1 472 63.6
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 2.9e-162 575.9 474 63.3
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 7.9e-160 567.8 466 63.9
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 3.0e-159 565.8 481 61.7
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 3.0e-159 565.8 466 63.7
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 5.1e-159 565.1 478 63.0
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 9.7e-158 560.8 463 62.6
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 2.4e-156 556.2 473 62.4
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 1.2e-155 553.9 481 61.1
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 2.6e-155 552.7 474 61.2
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 5.9e-155 551.6 474 61.0
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.3e-154 550.4 478 60.9
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.7e-154 550.1 474 59.9
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.7e-154 550.1 474 59.9
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.0e-154 548.5 474 59.9
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 8.5e-154 547.7 478 60.9
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 1.1e-153 547.4 474 60.3
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 1.4e-153 547.0 476 61.8
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.5e-153 546.2 478 60.3
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 2.5e-153 546.2 467 60.2
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 4.2e-153 545.4 484 61.0
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 4.2e-153 545.4 486 60.5
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.0e-151 540.8 474 59.9
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 6.7e-151 538.1 460 60.2
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 8.8e-151 537.7 472 59.7
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.5e-150 536.2 460 60.0
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 9.7e-150 534.3 472 58.7
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 3.1e-148 529.3 478 59.2
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.4e-147 525.8 463 59.0
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 7.7e-147 524.6 467 58.0
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 7.7e-147 524.6 465 60.9
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 2.2e-146 523.1 464 59.7
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.8e-146 522.3 469 57.8
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 5.0e-146 521.9 477 58.7
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 7.2e-145 518.1 475 58.7
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 2.7e-144 516.2 465 57.2
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.6e-144 515.8 473 57.7
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 3.0e-143 512.7 476 58.8
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 6.7e-143 511.5 466 58.2
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.1e-142 510.8 465 59.6
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 2.0e-142 510.0 468 58.5
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.3e-142 509.2 462 59.1
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 9.7e-142 507.7 468 59.0
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 8.2e-141 504.6 468 57.5
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.1e-140 501.1 454 57.9
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 3.5e-139 499.2 468 56.6
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 3.5e-139 499.2 471 57.5
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 5.9e-139 498.4 465 57.6
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 7.7e-139 498.0 468 57.5
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 1.0e-138 497.7 462 55.6
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.2e-138 496.5 464 60.1
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.2e-138 496.5 459 54.0
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 2.9e-138 496.1 463 54.6
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 6.5e-138 495.0 460 58.5
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 6.5e-138 495.0 495 54.7
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 4.2e-137 492.3 465 55.9
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 5.5e-137 491.9 481 53.8
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.2e-136 490.7 465 55.9
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 1.2e-136 490.7 474 55.3
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 4.7e-136 488.8 487 54.4
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 8.0e-136 488.0 462 56.3
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 4.4e-134 482.3 477 54.5
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 6.3e-133 478.4 479 53.4
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 6.3e-133 478.4 446 54.7
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 1.4e-132 477.2 446 54.7
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 2.4e-132 476.5 479 53.4
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 3.1e-132 476.1 479 53.2
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 3.1e-132 476.1 470 55.1
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 7.0e-132 474.9 463 57.0
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.0e-126 456.8 424 54.7
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 3.3e-126 456.1 439 52.8
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 4.4e-126 455.7 462 51.5
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 2.2e-125 453.4 523 49.5
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 2.8e-125 453.0 468 53.4
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 2.8e-125 453.0 480 53.5
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 8.3e-125 451.4 473 53.1
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 5.3e-124 448.7 449 53.7
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.6e-123 447.2 408 58.1
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 1.1e-121 441.0 465 51.8
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 1.5e-121 440.7 470 52.8
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.5e-121 439.9 461 50.1
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 2.5e-121 439.9 464 51.3
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 4.2e-121 439.1 466 49.6
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 5.5e-121 438.7 461 49.9
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 2.7e-120 436.4 469 52.0
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 1.0e-119 434.5 469 51.8
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.8e-119 433.7 467 51.8
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.7e-117 427.2 452 48.5
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 5.4e-116 422.2 475 49.9
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 7.7e-115 418.3 343 61.8
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 3.8e-114 416.0 469 50.3
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 7.2e-113 411.8 438 51.6
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.6e-112 410.6 451 50.1
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 9.8e-110 401.4 589 43.0
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.2e-109 400.2 458 47.4
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.6e-107 394.0 457 48.1
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.1e-104 383.6 277 67.5
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 1.4e-103 380.9 459 47.1
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 3.4e-102 376.3 267 65.5
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 5.8e-102 375.6 465 44.9
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 1.7e-101 374.0 458 45.4
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 6.4e-101 372.1 441 46.7
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-100 371.3 300 62.0
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-100 371.3 300 62.0
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 2.0e-99 367.1 303 60.7
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.0e-98 364.8 457 44.0
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-97 360.9 349 56.7
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 1.9e-97 360.5 462 45.2
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 1.3e-90 337.8 263 64.6
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 1.1e-89 334.7 468 44.4
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 5.2e-87 325.9 448 43.1
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 1.5e-81 307.8 265 56.6
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 2.2e-77 293.9 449 43.7
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 3.8e-77 293.1 458 38.2
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 6.9e-63 245.7 460 34.8
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 1.2e-62 245.0 421 37.3
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 6.9e-55 219.2 472 35.8
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 3.8e-53 213.4 470 33.6
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 1.3e-48 198.4 467 32.5
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 1.8e-47 194.5 331 40.5
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 1.5e-46 191.4 464 32.5
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 2.6e-46 190.7 222 50.5
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 1.7e-45 188.0 222 50.5
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.2e-45 187.6 316 40.8
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 4.6e-43 179.9 234 51.7
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.0e-42 178.7 460 30.9
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 2.5e-41 174.1 143 64.3
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.1e-39 166.8 218 36.7
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 8.5e-37 159.1 136 55.9
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 6.3e-32 142.9 169 46.7
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 8.5e-29 132.5 106 58.5
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 6.7e-26 122.9 124 54.8
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 6.7e-26 122.9 124 54.8
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-25 121.7 187 44.9
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.6e-25 120.9 236 30.9
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 3.3e-25 120.6 453 26.3
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 9.7e-25 119.0 232 40.9
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 8.2e-24 115.9 150 49.3
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 8.2e-24 115.9 192 32.3
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.1e-23 113.6 185 42.2
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 2.0e-22 111.3 87 63.2
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.0e-22 111.3 98 51.0
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 3.8e-21 107.1 139 47.5
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 6.5e-21 106.3 460 26.3
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 9.4e-20 102.4 169 34.3
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 3.7e-16 90.5 118 42.4
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.8e-15 88.2 83 59.0
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.4e-15 87.8 75 61.3
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 2.0e-14 84.7 245 27.8
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.7e-14 82.8 74 60.8
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.3e-13 82.0 66 62.1
Sabra12G0033900 Salix brachista HOM05D000239 ORTHO05D000484 1.1e-12 79.0 298 28.2
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 4.4e-09 67.0 105 35.2
Haze_04707 Corylus avellana HOM05D006763 ORTHO05D008659 1.3e-08 65.5 89 53.9


User provided reference genes

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