Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 1.4e-290 1002.3 508 100.0
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 4.4e-273 944.1 509 94.5
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 2.2e-248 862.1 504 85.7
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 2.9e-248 861.7 491 88.0
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 1.9e-247 859.0 504 85.1
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 7.8e-246 853.6 497 86.1
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 5.0e-245 850.9 504 83.9
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.5e-244 849.4 504 83.7
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 1.2e-243 846.3 495 85.7
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 2.1e-243 845.5 504 83.3
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 5.2e-242 840.9 496 84.5
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 1.5e-241 839.3 501 83.6
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 2.6e-241 838.6 505 83.0
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 4.4e-241 837.8 505 82.0
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 9.9e-241 836.6 504 82.1
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 2.2e-240 835.5 504 82.9
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 2.9e-240 835.1 505 82.8
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 3.7e-240 834.7 502 82.1
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.1e-239 831.2 508 82.1
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.2e-238 829.7 508 82.1
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 1.2e-238 829.7 509 82.3
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 1.0e-237 826.6 508 81.3
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 1.3e-237 826.2 504 81.9
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 1.5e-236 822.8 505 82.2
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 3.3e-236 821.6 508 82.1
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 4.3e-236 821.2 495 83.0
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 1.2e-235 819.7 511 80.6
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 6.8e-234 813.9 495 81.2
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 8.9e-234 813.5 491 82.7
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 4.4e-233 811.2 489 82.4
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 7.6e-233 810.4 494 81.8
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 1.7e-232 809.3 496 82.3
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 2.4e-231 805.4 507 78.3
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 9.2e-231 803.5 489 80.6
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 2.1e-230 802.4 491 81.1
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 3.5e-230 801.6 487 81.3
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 3.0e-229 798.5 507 78.3
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 3.9e-229 798.1 494 80.4
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 5.1e-229 797.7 495 80.6
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 5.1e-229 797.7 505 79.4
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 5.1e-229 797.7 505 78.0
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 6.6e-229 797.3 504 79.4
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 1.1e-228 796.6 502 79.5
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 5.6e-228 794.3 507 79.1
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 2.1e-227 792.3 480 80.8
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 6.2e-227 790.8 505 78.0
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 1.1e-226 790.0 500 78.4
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 1.4e-226 789.6 502 77.5
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 2.4e-226 788.9 494 78.5
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 6.9e-226 787.3 465 82.6
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 9.0e-226 786.9 505 77.8
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 1.5e-225 786.2 508 78.0
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 2.0e-225 785.8 489 78.9
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 3.4e-225 785.0 493 78.1
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 3.4e-225 785.0 493 78.1
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 1.3e-224 783.1 505 78.0
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 4.9e-224 781.2 504 77.2
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 1.4e-223 779.6 451 86.9
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 3.2e-223 778.5 475 80.4
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 3.5e-222 775.0 487 79.3
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 6.6e-221 770.8 510 76.1
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 3.3e-220 768.5 502 76.3
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 3.3e-220 768.5 502 76.3
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 4.3e-220 768.1 491 78.0
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 5.6e-220 767.7 475 78.9
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 7.3e-220 767.3 499 76.4
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 1.3e-219 766.5 510 75.9
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 4.8e-219 764.6 502 75.1
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.1e-218 763.5 490 76.7
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 1.4e-218 763.1 498 77.1
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 2.4e-218 762.3 490 77.6
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 2.4e-218 762.3 495 76.8
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 3.1e-218 761.9 498 75.1
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 3.1e-218 761.9 453 84.3
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 5.3e-218 761.1 498 76.9
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 5.3e-218 761.1 486 78.8
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 6.9e-218 760.8 503 75.3
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 6.9e-218 760.8 495 75.4
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 9.0e-218 760.4 498 76.5
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 9.0e-218 760.4 498 75.7
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 2.6e-217 758.8 493 76.5
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 2.9e-216 755.4 495 74.7
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 2.9e-216 755.4 477 77.1
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 4.9e-216 754.6 485 76.9
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 4.9e-216 754.6 505 75.2
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 4.2e-215 751.5 471 77.7
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 4.2e-215 751.5 438 84.2
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 9.3e-215 750.4 472 77.1
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 1.6e-214 749.6 501 74.5
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.3e-213 745.7 491 76.2
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 2.3e-213 745.7 491 76.2
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 2.1e-211 739.2 494 74.3
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.1e-210 736.9 490 75.7
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 1.1e-210 736.9 493 74.0
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 1.4e-210 736.5 479 76.0
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 9.3e-207 723.8 485 73.8
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 5.6e-204 714.5 507 73.4
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 6.5e-200 701.0 505 71.3
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 9.3e-199 697.2 482 74.7
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 1.6e-198 696.4 485 70.5
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 3.9e-197 691.8 481 68.2
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.1e-196 690.3 444 80.0
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.2e-193 680.2 409 79.7
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.8e-192 675.2 483 68.3
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 8.5e-192 674.1 483 68.1
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.4e-191 673.3 483 67.9
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 2.5e-191 672.5 509 69.4
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 1.2e-182 643.7 469 65.9
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 1.6e-182 643.3 466 68.0
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 8.8e-181 637.5 481 63.6
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 2.7e-174 615.9 497 63.6
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 5.7e-172 608.2 407 74.0
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 2.0e-169 599.7 485 58.1
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.3e-168 597.0 477 60.0
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.6e-166 590.1 478 59.6
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 4.1e-162 575.5 482 59.3
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 2.4e-154 549.7 450 66.7
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.4e-149 533.9 404 70.5
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 5.9e-145 518.5 474 53.0
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 6.1e-142 508.4 322 80.7
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 6.0e-137 491.9 334 74.3
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 5.4e-130 468.8 491 49.1
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 3.3e-127 459.5 493 48.3
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 3.7e-78 296.6 210 71.9
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 1.7e-62 244.6 489 30.9
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 6.7e-56 222.6 129 84.5
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 1.4e-40 171.8 105 75.2
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 1.8e-37 161.4 436 27.8
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 1.4e-29 135.2 72 86.1
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 1.2e-25 122.1 80 82.5
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 1.1e-18 99.0 425 24.2
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 1.1e-16 92.4 65 73.8
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 2.0e-15 88.2 477 26.0
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 1.7e-06 58.5 28 92.9


User provided reference genes

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