Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0085900 Salix brachista HOM05D004711 ORTHO05D005594 1.1e-204 716.5 360 100.0
Potri.006G110700 Populus trichocarpa HOM05D004711 ORTHO05D005594 1.8e-58 230.7 130 92.3
Sabra06G0086000 Salix brachista HOM05D004711 ORTHO05D005594 5.7e-49 199.1 113 92.0
Potri.016G139500 Populus trichocarpa HOM05D004711 ORTHO05D005594 9.6e-49 198.4 128 79.7
Sabra04G0156000 Salix brachista HOM05D004711 ORTHO05D005594 6.3e-48 195.7 130 77.7
Haze_21199 Corylus avellana HOM05D004711 ORTHO05D005594 2.3e-42 177.2 130 66.9
Manes.09G122600 Manihot esculenta HOM05D004711 ORTHO05D005594 4.3e-41 172.9 130 66.9
TWI74G1298 Tripterygium wilfordii HOM05D004711 ORTHO05D005594 7.4e-41 172.2 134 67.2
Duzib268G1837 Durio zibethinus HOM05D004711 ORTHO05D005594 2.8e-40 170.2 134 64.2
Gohir.A03G087100 Gossypium hirsutum HOM05D004711 ORTHO05D005594 4.1e-39 166.4 126 65.9
Hma1.2p1_0537F.1_g174195 Hydrangea macrophylla HOM05D004711 ORTHO05D005594 1.2e-38 164.9 130 63.8
Ciclev10011470m.g Citrus clementina HOM05D004711 ORTHO05D005594 3.4e-38 163.3 127 66.9
Dinv16951 Davidia involucrata HOM05D004711 ORTHO05D005594 2.2e-37 160.6 126 65.9
COL.COLO4_21250 Corchorus olitorius HOM05D004711 ORTHO05D005594 2.9e-37 160.2 134 62.7
Prupe.6G296400 Prunus persica HOM05D004711 ORTHO05D005594 1.1e-36 158.3 127 62.2
PGR004G0084 Punica granatum HOM05D004711 ORTHO05D005594 1.1e-36 158.3 130 64.6
Dinv25360 Davidia involucrata HOM05D004711 ORTHO05D005594 1.4e-36 157.9 126 62.7
GSVIVG01029882001 Vitis vinifera HOM05D004711 ORTHO05D005594 1.9e-36 157.5 127 65.4
Gorai.005G121000 Gossypium raimondii HOM05D004711 ORTHO05D005594 1.6e-35 154.5 125 63.2
MD12G1191700 Malus domestica HOM05D004711 ORTHO05D005594 4.6e-35 152.9 127 60.6
Psat3g118000 Pisum sativum HOM05D004711 ORTHO05D005594 4.6e-35 152.9 136 61.0
Cpa.g.sc72.61 Carica papaya HOM05D004711 ORTHO05D005594 1.0e-34 151.8 118 66.9
RcHm_v2.0_Chr3g0460111 Rosa chinensis HOM05D004711 ORTHO05D005594 1.0e-34 151.8 131 61.8
Glyma.09G272800 Glycine max HOM05D004711 ORTHO05D005594 3.0e-34 150.2 124 63.7
VMungo1383G3052 Vigna mungo HOM05D004711 ORTHO05D005594 3.9e-34 149.8 126 59.5
Thecc.04G149100 Theobroma cacao HOM05D004711 ORTHO05D005594 5.1e-34 149.4 130 61.5
Manes.08G169400 Manihot esculenta HOM05D004711 ORTHO05D005594 6.7e-34 149.1 110 69.1
Gohir.D02G002600 Gossypium hirsutum HOM05D004711 ORTHO05D005594 2.0e-33 147.5 130 60.8
CSS0041259 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 3.3e-33 146.7 137 59.9
FAN09G1198 Fragaria x ananassa HOM05D004711 ORTHO05D005594 3.3e-33 146.7 131 59.5
arahy.Tifrunner.gnm1.ann1.C9I5IG Arachis hypogaea HOM05D004711 ORTHO05D005594 5.7e-33 146.0 133 60.9
CSS0008345 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 5.7e-33 146.0 137 59.9
QL07p031674 Quercus lobata HOM05D004711 ORTHO05D005594 5.7e-33 146.0 135 59.3
TAR633G0481 Trochodendron aralioides HOM05D004711 ORTHO05D005594 7.4e-33 145.6 130 62.3
Gorai.005G003100 Gossypium raimondii HOM05D004711 ORTHO05D005594 1.7e-32 144.4 128 60.2
Actinidia29018 Actinidia chinensis HOM05D004711 ORTHO05D005594 2.2e-32 144.1 130 57.7
Gohir.A02G002300 Gossypium hirsutum HOM05D004711 ORTHO05D005594 2.8e-32 143.7 130 60.0
Gohir.D02G106500 Gossypium hirsutum HOM05D004711 ORTHO05D005594 2.8e-32 143.7 130 59.2
Lj1g0020419 Lotus japonicus HOM05D004711 ORTHO05D005594 2.8e-32 143.7 125 60.0
TWI53G0370 Tripterygium wilfordii HOM05D004711 ORTHO05D005594 2.8e-32 143.7 117 63.2
Lj2C57T4 Lonicera japonica HOM05D004711 ORTHO05D005594 4.8e-32 142.9 130 61.5
Sc20g0007170 Simmondsia chinensis HOM05D004711 ORTHO05D005594 4.8e-32 142.9 130 60.0
HanXRQChr10g0287631 Helianthus annuus HOM05D004711 ORTHO05D005594 6.3e-32 142.5 133 60.2
Atru.chr8.78 Acer truncatum HOM05D004711 ORTHO05D005594 1.1e-31 141.7 154 53.2
Actinidia11492 Actinidia chinensis HOM05D004711 ORTHO05D005594 1.4e-31 141.4 130 56.9
arahy.Tifrunner.gnm1.ann1.QFH4DU Arachis hypogaea HOM05D004711 ORTHO05D005594 1.4e-31 141.4 146 56.8
CSS0021593 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 1.4e-31 141.4 130 58.5
Rhsim05G0232600 Rhododendron simsii HOM05D004711 ORTHO05D005594 1.4e-31 141.4 130 57.7
Nn2g10244 Nelumbo nucifera HOM05D004711 ORTHO05D005594 2.4e-31 140.6 130 60.0
Ca_07784_v3 Cicer arietinum L. HOM05D004711 ORTHO05D005594 3.1e-31 140.2 131 59.5
THA.LOC104823329 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 4.1e-31 139.8 132 56.1
Sed0027783 Sechium edule HOM05D004711 ORTHO05D005594 6.9e-31 139.0 130 53.1
Cc06_g00250 Coffea canephora HOM05D004711 ORTHO05D005594 1.2e-30 138.3 136 55.1
Solyc09g031517.1 Solanum lycopersicum HOM05D004711 ORTHO05D005594 1.2e-30 138.3 130 59.2
Hund03689 Selenicereus undatus HOM05D004711 ORTHO05D005594 1.5e-30 137.9 130 58.5
Migut.J00018 Erythranthe guttata HOM05D004711 ORTHO05D005594 3.4e-30 136.7 127 59.8
CAN.G180.2 Capsicum annuum HOM05D004711 ORTHO05D005594 5.9e-30 136.0 136 58.8
Peaxi162Scf00732g00135 Petunia axillaris HOM05D004711 ORTHO05D005594 5.9e-30 136.0 136 58.8
Phvul.008G080400 Phaseolus vulgaris HOM05D004711 ORTHO05D005594 5.9e-30 136.0 118 58.5
EL10Ac7g17131 Beta vulgaris HOM05D004711 ORTHO05D005594 7.7e-30 135.6 127 59.8
Aqoxy4G03297 Aquilegia oxysepala HOM05D004711 ORTHO05D005594 2.2e-29 134.0 129 59.7
ECA247G0260 Erigeron canadensis HOM05D004711 ORTHO05D005594 2.2e-29 134.0 130 55.4
Eucgr.K01295 Eucalyptus grandis HOM05D004711 ORTHO05D005594 2.2e-29 134.0 127 56.7
Lj3A939T103 Lonicera japonica HOM05D004711 ORTHO05D005594 2.2e-29 134.0 125 60.8
Actinidia32572 Actinidia chinensis HOM05D004711 ORTHO05D005594 6.5e-29 132.5 130 55.4
DCAR_015327 Daucus carota HOM05D004711 ORTHO05D005594 3.2e-28 130.2 137 56.9
Oeu030100.1 Olea europaea HOM05D004711 ORTHO05D005594 4.2e-28 129.8 138 54.3
Sed0008721 Sechium edule HOM05D004711 ORTHO05D005594 5.5e-28 129.4 156 50.0
MELO3C025248.2 Cucumis melo HOM05D004711 ORTHO05D005594 7.2e-28 129.0 130 52.3
Aa31LG5G18710 Aethionema arabicum HOM05D004711 ORTHO05D005594 1.2e-27 128.3 129 55.0
Lsat_1_v5_gn_9_39741 Lactuca sativa HOM05D004711 ORTHO05D005594 2.7e-27 127.1 134 56.0
Glyma.18G216300 Glycine max HOM05D004711 ORTHO05D005594 3.6e-27 126.7 114 60.5
Sopen09g013790 Solanum pennellii HOM05D004711 ORTHO05D005594 3.6e-27 126.7 118 59.3
AT3G08670 Arabidopsis thaliana HOM05D004711 ORTHO05D005594 4.7e-27 126.3 133 56.4
ECA248G3895 Erigeron canadensis HOM05D001126 ORTHO05D000991 6.1e-27 125.9 124 57.3
MD04G1176700 Malus domestica HOM05D004711 ORTHO05D005594 6.1e-27 125.9 111 58.6
TAR636G2556 Trochodendron aralioides HOM05D004711 ORTHO05D005594 6.1e-27 125.9 123 56.9
Duzib151G1091 Durio zibethinus HOM05D004711 ORTHO05D005594 7.9e-27 125.6 128 54.7
FvH4_6g09520 Fragaria vesca HOM05D004711 ORTHO05D005594 1.0e-26 125.2 118 56.8
FAN14G5267 Fragaria x ananassa HOM05D004711 ORTHO05D005594 1.0e-26 125.2 118 56.8
FAN02G0291 Fragaria x ananassa HOM05D004711 ORTHO05D005594 2.3e-26 124.0 118 55.9
Thhalv10020404m.g Eutrema salsugineum HOM05D004711 ORTHO05D005594 3.9e-26 123.2 134 56.0
Carub.0003s0780 Capsella rubella HOM05D004711 ORTHO05D005594 5.1e-26 122.9 134 55.2
TPR.G24318 Trifolium pratense HOM05D004711 ORTHO05D005594 5.1e-26 122.9 110 60.9
CsaV3_4G027310 Cucumis sativus L. HOM05D004711 ORTHO05D005594 6.7e-26 122.5 130 50.0
THA.LOC104816161 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 6.7e-26 122.5 136 52.2
THA.LOC104816162 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 6.7e-26 122.5 136 52.2
THA.LOC104816163 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 6.7e-26 122.5 136 52.2
ClCG04G006250 Citrullus lanatus HOM05D004711 ORTHO05D005594 8.8e-26 122.1 130 50.8
Medtr7g073720 Medicago truncatula HOM05D004711 ORTHO05D005594 1.5e-25 121.3 112 59.8
Oeu013178.3 Olea europaea HOM05D004711 ORTHO05D005594 1.5e-25 121.3 136 51.5
MSTRG.5483 Avicennia marina HOM05D004711 ORTHO05D005594 2.0e-25 120.9 126 54.0
CARHR082970 Cardamine hirsuta HOM05D004711 ORTHO05D005594 2.6e-25 120.6 135 55.6
AL3G19670 Arabidopsis lyrata HOM05D004711 ORTHO05D005594 3.3e-25 120.2 133 54.9
FAN05G2346 Fragaria x ananassa HOM05D004711 ORTHO05D005594 5.7e-25 119.4 118 54.2
PGSC0003DMG400002318 Solanum tuberosum HOM05D004711 ORTHO05D005594 5.7e-25 119.4 113 60.2
PSO170G0854 Papaver somniferum HOM05D004711 ORTHO05D005594 2.2e-24 117.5 140 50.7
Sp3g07110 Schrenkiella parvula HOM05D004711 ORTHO05D005594 2.8e-24 117.1 135 54.8
A05p40110 Brassica napus HOM05D004711 ORTHO05D005594 4.8e-24 116.3 136 54.4
PSO017G6473 Papaver somniferum HOM05D004711 ORTHO05D005594 4.8e-24 116.3 128 53.9
Oeu026938.1 Olea europaea HOM05D004711 ORTHO05D005594 6.3e-24 115.9 138 50.0
BcaB04g18575 Brassica carinata HOM05D004711 ORTHO05D005594 8.2e-24 115.5 134 54.5
AUR62029794 Chenopodium quinoa HOM05D004711 ORTHO05D005594 8.2e-24 115.5 118 55.9
Ah.15g089840 Amaranthus hybridus HOM05D004711 ORTHO05D005594 1.1e-23 115.2 119 52.9
BolC5t34578H Brassica oleracea HOM05D004711 ORTHO05D005594 1.8e-23 114.4 136 53.7
BcaC05g29601 Brassica carinata HOM05D004711 ORTHO05D005594 2.4e-23 114.0 136 53.7
C03p44020 Brassica napus HOM05D004711 ORTHO05D005594 2.4e-23 114.0 144 51.4
SGA_v2.0_scaffold85G26592 Striga asiatica HOM05D004711 ORTHO05D005594 2.4e-23 114.0 127 56.7
AUR62006439 Chenopodium quinoa HOM05D004711 ORTHO05D005594 3.1e-23 113.6 119 55.5
Nn5g26805 Nelumbo nucifera HOM05D004711 ORTHO05D005594 4.1e-23 113.2 130 55.4
C05p59190 Brassica napus HOM05D004711 ORTHO05D005594 5.3e-23 112.8 136 52.9
BcaC05g29602 Brassica carinata HOM05D004711 ORTHO05D005594 1.0e-21 108.6 133 51.9
BcaC01g04190 Brassica carinata HOM05D004711 ORTHO05D005594 1.3e-21 108.2 144 50.0
BolC3t16673H Brassica oleracea HOM05D004711 ORTHO05D005594 1.3e-21 108.2 144 50.0
HanXRQChr01g0000511 Helianthus annuus HOM05D004711 ORTHO05D005594 1.7e-21 107.8 120 53.3
BraA03t12809Z Brassica rapa HOM05D004711 ORTHO05D005594 2.2e-21 107.5 143 49.7
Nn1g01604 Nelumbo nucifera HOM05D004711 ORTHO05D005594 2.9e-21 107.1 144 48.6
A03p36410 Brassica napus HOM05D004711 ORTHO05D005594 3.8e-21 106.7 144 49.3
Oeu063842.1 Olea europaea HOM05D004711 ORTHO05D005594 1.1e-20 105.1 136 47.1
PSO384G0846 Papaver somniferum HOM05D004711 ORTHO05D005594 5.5e-20 102.8 133 46.6
PSO339G1855 Papaver somniferum HOM05D004711 ORTHO05D005594 2.1e-19 100.9 133 46.6
Glyma.16G220600 Glycine max HOM05D004711 ORTHO05D005594 4.0e-18 96.7 139 48.9
Phvul.010G058700 Phaseolus vulgaris HOM05D004711 ORTHO05D005594 5.7e-17 92.8 148 44.6
VMungo0331G0284 Vigna mungo HOM05D004711 ORTHO05D005594 8.2e-16 89.0 142 46.5
Hma1.2p1_2237F.1_g317760 Hydrangea macrophylla HOM05D004711 ORTHO05D005594 3.1e-15 87.0 113 49.6
HPP92_019048 Vanilla planifolia HOM05D004711 ORTHO05D005594 1.0e-13 82.0 137 44.5
unitig_578.g15918 Utricularia gibba HOM05D004711 ORTHO05D005594 1.5e-12 78.2 121 47.1
Lsat_1_v5_gn_5_151680 Lactuca sativa HOM05D004711 ORTHO05D005594 1.9e-12 77.8 114 47.4
BcaB04g18580 Brassica carinata HOM05D004711 ORTHO05D005594 6.1e-11 72.8 72 54.2
BcaC01g04191 Brassica carinata HOM05D004711 ORTHO05D005594 6.1e-11 72.8 72 54.2
BcaB04g18579 Brassica carinata HOM05D004711 ORTHO05D005594 1.0e-10 72.0 110 45.5
Zm00001eb290760 Zea mays HOM05D004711 ORTHO05D005594 1.4e-10 71.6 130 37.7
Lj3g0009953 Lotus japonicus HOM05D004711 ORTHO05D005594 1.8e-10 71.2 161 38.5
SEGI_29321 Sequoiadendron giganteum HOM05D001930 ORTHO05D001345 5.2e-10 69.7 155 38.7
ATR1127G195 Amborella trichopoda HOM05D004711 ORTHO05D005594 1.2e-09 68.6 121 39.7
Zm00001eb352090 Zea mays HOM05D004711 ORTHO05D005594 1.5e-09 68.2 130 38.5
SEGI_32275 Sequoiadendron giganteum HOM05D001930 ORTHO05D001345 2.0e-09 67.8 152 40.8
unitig_22.g6618 Utricularia gibba HOM05D004711 ORTHO05D005594 3.4e-09 67.0 125 43.2
Os05g0480600 Oryza sativa ssp. japonica HOM05D004711 ORTHO05D005594 1.7e-08 64.7 130 36.2
Os01g0819000 Oryza sativa ssp. japonica HOM05D004711 ORTHO05D005594 2.2e-08 64.3 129 36.4
Zm00001eb368960 Zea mays HOM05D004711 ORTHO05D005594 2.8e-08 63.9 130 39.2
CDE04G1233 Ceratophyllum demersum HOM05D004711 ORTHO05D005594 6.3e-08 62.8 138 37.0
COL.COLO4_14547 Corchorus olitorius HOM05D001930 ORTHO05D001345 1.8e-07 61.2 149 35.6
Sc10g0002280 Simmondsia chinensis HOM05D001930 ORTHO05D001345 1.8e-07 61.2 150 39.3
Glyma.03G001700 Glycine max HOM05D004711 ORTHO05D005594 2.4e-07 60.8 86 45.3
AL3G20020 Arabidopsis lyrata HOM05D001930 ORTHO05D001345 5.4e-07 59.7 158 35.4
Thhalv10016404m.g Eutrema salsugineum HOM05D001930 ORTHO05D001345 7.0e-07 59.3 149 34.9
TPR.G2544 Trifolium pratense HOM05D001930 ORTHO05D001345 9.1e-07 58.9 155 35.5
Sabra10G0146700 Salix brachista HOM05D001930 ORTHO05D001345 1.6e-06 58.2 152 35.5
AT2G40070 Arabidopsis thaliana HOM05D001930 ORTHO05D001345 2.0e-06 57.8 149 35.6
Ca_15267_v3 Cicer arietinum L. HOM05D001930 ORTHO05D001345 2.0e-06 57.8 157 36.9
ATR0618G241 Amborella trichopoda HOM05D001930 ORTHO05D001345 3.5e-06 57.0 159 35.2
AL4G37690 Arabidopsis lyrata HOM05D001930 ORTHO05D001345 3.5e-06 57.0 149 35.6
Carub.0004s2221 Capsella rubella HOM05D001930 ORTHO05D001345 3.5e-06 57.0 149 35.6
Psat5g126440 Pisum sativum HOM05D001930 ORTHO05D001345 3.5e-06 57.0 155 37.4
BcaB01g03592 Brassica carinata HOM05D001930 ORTHO05D001345 4.5e-06 56.6 149 34.2
CARHR135010 Cardamine hirsuta HOM05D001930 ORTHO05D001345 4.5e-06 56.6 149 34.9
Sp4g22360 Schrenkiella parvula HOM05D001930 ORTHO05D001345 4.5e-06 56.6 149 35.6


User provided reference genes

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