Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 5.8e-211 737.3 365 100.0
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 7.3e-145 517.7 277 91.0
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.1e-139 499.6 282 85.5
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 2.4e-132 476.1 288 80.2
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 4.6e-131 471.9 277 82.3
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 6.0e-131 471.5 277 80.9
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 7.8e-131 471.1 277 81.2
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 1.1e-129 467.2 277 79.8
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 1.1e-129 467.2 277 80.9
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.9e-129 466.5 277 80.1
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 3.3e-129 465.7 277 80.9
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 3.3e-129 465.7 277 81.6
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 5.6e-129 464.9 277 80.9
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 5.6e-129 464.9 277 80.5
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 7.3e-129 464.5 277 79.4
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 7.3e-129 464.5 277 79.8
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 9.6e-129 464.2 277 80.5
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 1.2e-128 463.8 276 81.2
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 1.2e-128 463.8 276 80.8
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.2e-128 463.8 277 80.1
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.6e-128 463.4 288 77.4
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 4.7e-128 461.8 279 79.6
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 4.7e-128 461.8 278 79.9
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 6.2e-128 461.5 277 79.8
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 8.1e-128 461.1 287 76.7
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 8.1e-128 461.1 277 79.8
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 8.1e-128 461.1 277 79.4
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 1.1e-127 460.7 277 79.4
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 1.1e-127 460.7 277 79.4
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 1.1e-127 460.7 277 78.3
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 1.1e-127 460.7 277 80.1
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.4e-127 460.3 277 79.4
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 1.8e-127 459.9 277 79.4
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.8e-127 459.9 277 79.8
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 2.4e-127 459.5 277 79.1
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 5.2e-127 458.4 288 77.1
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 5.2e-127 458.4 277 78.0
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 5.2e-127 458.4 277 79.8
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 6.8e-127 458.0 277 79.8
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 6.8e-127 458.0 275 78.9
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 6.8e-127 458.0 277 78.0
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 6.8e-127 458.0 277 79.8
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 8.9e-127 457.6 277 78.3
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 8.9e-127 457.6 277 79.1
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.2e-126 457.2 283 77.4
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 1.2e-126 457.2 277 78.7
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 1.5e-126 456.8 277 77.3
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 2.0e-126 456.4 277 79.1
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 2.0e-126 456.4 277 79.1
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 2.6e-126 456.1 277 79.4
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.6e-126 456.1 277 77.3
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 2.6e-126 456.1 277 78.7
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 4.4e-126 455.3 277 78.7
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 4.4e-126 455.3 271 80.4
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 5.8e-126 454.9 277 76.9
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 7.6e-126 454.5 277 79.1
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 7.6e-126 454.5 277 79.1
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 7.6e-126 454.5 279 78.9
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 7.6e-126 454.5 277 79.1
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 7.6e-126 454.5 277 78.3
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 9.9e-126 454.1 277 76.5
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 1.3e-125 453.8 277 78.0
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 2.2e-125 453.0 277 77.3
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 2.9e-125 452.6 278 79.1
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 2.9e-125 452.6 278 77.0
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 3.8e-125 452.2 277 79.4
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 4.9e-125 451.8 277 77.6
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 4.9e-125 451.8 279 77.1
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 4.9e-125 451.8 277 77.6
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 6.4e-125 451.4 277 78.3
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.4e-125 451.4 277 78.3
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 8.4e-125 451.1 277 77.6
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.4e-124 450.3 279 76.7
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 1.9e-124 449.9 280 77.1
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 3.2e-124 449.1 277 78.0
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 7.1e-124 448.0 277 75.8
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 9.3e-124 447.6 277 77.3
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 9.3e-124 447.6 279 76.7
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.2e-123 447.2 275 76.4
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 1.6e-123 446.8 277 76.9
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 2.1e-123 446.4 276 76.8
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.0e-122 444.1 277 78.0
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 1.0e-122 444.1 277 76.9
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.3e-122 443.7 279 76.3
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 2.3e-122 443.0 303 71.9
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 3.0e-122 442.6 277 75.5
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 8.7e-122 441.0 277 75.5
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.5e-121 440.3 277 75.5
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 2.5e-121 439.5 298 71.8
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.3e-120 437.2 277 76.9
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.3e-120 437.2 288 73.3
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 2.1e-120 436.4 277 74.7
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 2.8e-120 436.0 295 72.9
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 2.8e-120 436.0 309 69.9
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 2.8e-120 436.0 277 74.7
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 4.8e-120 435.3 277 74.7
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 6.2e-120 434.9 277 74.4
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 6.2e-120 434.9 277 73.3
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.4e-119 433.7 277 75.8
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 9.0e-119 431.0 277 74.0
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.2e-118 430.6 310 67.4
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.2e-118 430.6 277 74.7
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 1.2e-115 420.6 238 83.6
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 4.6e-115 418.7 277 71.5
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.3e-114 417.2 277 74.4
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 7.3e-113 411.4 388 54.6
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 6.2e-112 408.3 292 68.2
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.4e-111 407.1 289 69.9
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 1.8e-111 406.8 266 75.6
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.4e-110 402.5 234 81.6
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 2.7e-107 392.9 294 64.6
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 3.3e-105 386.0 242 76.9
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 5.6e-105 385.2 284 65.1
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 8.1e-104 381.3 300 66.0
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.1e-100 370.9 252 72.2
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 2.3e-98 363.2 294 62.2
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 8.2e-96 354.8 257 71.6
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 2.6e-94 349.7 287 62.0
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 5.8e-94 348.6 290 59.0
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-93 347.4 277 65.3
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 1.9e-89 333.6 188 80.9
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 2.2e-88 330.1 311 54.7
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 6.9e-87 325.1 299 54.5
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 3.2e-84 316.2 215 67.9
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 1.0e-82 311.2 294 55.1
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 3.1e-79 299.7 162 87.0
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 5.5e-76 288.9 157 83.4
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 2.7e-75 286.6 234 65.8
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 4.5e-70 269.2 173 75.1
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 3.4e-57 226.5 123 86.2
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 8.3e-56 221.9 209 55.0
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.2e-49 201.4 132 71.2
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 1.3e-45 188.0 101 86.1
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.3e-44 183.3 101 84.2
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-40 171.4 132 66.7
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 7.0e-39 165.6 234 43.6
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 5.6e-36 156.0 110 64.5
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 1.5e-33 147.9 103 69.9
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-31 141.0 103 68.0
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 7.8e-30 135.6 76 77.6
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 1.2e-27 128.3 132 53.0
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.0e-21 107.1 77 70.1
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 6.6e-21 105.9 57 80.7
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 4.9e-16 89.7 68 63.2
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 4.9e-16 89.7 68 63.2
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.4e-15 88.2 75 62.7
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 6.0e-14 82.8 41 87.8
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 5.6e-12 76.3 35 88.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.6e-09 67.4 50 68.0
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 4.2e-07 60.1 35 77.1
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 5.4e-07 59.7 58 51.7
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.2e-06 58.5 28 92.9
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 4.6e-06 56.6 54 55.6
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 4.6e-06 56.6 35 74.3


User provided reference genes

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