Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0076900 Salix brachista HOM05D007481 ORTHO05D009444 9.8e-152 540.0 262 100.0
Potri.006G100100 Populus trichocarpa HOM05D007481 ORTHO05D009444 6.2e-138 494.2 254 93.3
Manes.09G104600 Manihot esculenta HOM05D007481 ORTHO05D009444 3.8e-111 405.2 255 78.0
GSVIVG01033961001 Vitis vinifera HOM05D007481 ORTHO05D009444 8.7e-108 394.0 262 72.5
MD04G1152000 Malus domestica HOM05D007481 ORTHO05D009444 2.1e-106 389.4 258 72.5
CSS0016102 Camellia sinensis var. sinensis HOM05D007481 ORTHO05D009444 3.7e-106 388.7 247 76.1
TWI74G0365 Tripterygium wilfordii HOM05D007481 ORTHO05D009444 3.7e-106 388.7 246 76.8
Prupe.6G277100 Prunus persica HOM05D007481 ORTHO05D009444 1.4e-105 386.7 246 75.6
CiPaw.10G156500 Carya illinoinensis HOM05D007481 ORTHO05D009444 9.0e-105 384.0 255 74.1
FAN05G5358 Fragaria x ananassa HOM05D007481 ORTHO05D009444 9.0e-105 384.0 247 74.1
RcHm_v2.0_Chr3g0463171 Rosa chinensis HOM05D007481 ORTHO05D009444 1.2e-104 383.6 255 72.9
QL07p035708 Quercus lobata HOM05D007481 ORTHO05D009444 2.0e-104 382.9 246 74.8
Gohir.D09G160700 Gossypium hirsutum HOM05D007481 ORTHO05D009444 5.8e-104 381.3 249 72.7
Dinv04699 Davidia involucrata HOM05D007481 ORTHO05D009444 2.9e-103 379.0 249 74.7
Thecc.05G016400 Theobroma cacao HOM05D007481 ORTHO05D009444 4.9e-103 378.3 246 74.0
Cfa017210 Carpinus fangiana HOM05D007481 ORTHO05D009444 6.5e-103 377.9 226 78.3
Actinidia11588 Actinidia chinensis HOM05D007481 ORTHO05D009444 9.3e-102 374.0 245 74.7
Eucgr.B02817 Eucalyptus grandis HOM05D007481 ORTHO05D009444 1.6e-101 373.2 250 72.0
COL.COLO4_14539 Corchorus olitorius HOM05D007481 ORTHO05D009444 2.7e-101 372.5 254 70.9
Gorai.006G182400 Gossypium raimondii HOM05D007481 ORTHO05D009444 2.3e-100 369.4 283 64.3
CANSAT35G1044 Cannabis sativa HOM05D007481 ORTHO05D009444 3.0e-100 369.0 248 70.6
CAN.G616.2 Capsicum annuum HOM05D007481 ORTHO05D009444 3.0e-100 369.0 247 72.9
FAN02G0465 Fragaria x ananassa HOM05D007481 ORTHO05D009444 3.9e-100 368.6 239 74.1
PGR031G3607 Punica granatum HOM05D007481 ORTHO05D009444 1.9e-99 366.3 248 72.6
Cc06_g01380 Coffea canephora HOM05D007481 ORTHO05D009444 4.3e-99 365.2 247 71.3
CsaV3_4G026270 Cucumis sativus L. HOM05D007481 ORTHO05D009444 8.2e-98 360.9 248 70.6
Lj3g0018029 Lotus japonicus HOM05D007481 ORTHO05D009444 2.4e-97 359.4 244 70.9
ECA248G3524 Erigeron canadensis HOM05D007481 ORTHO05D009444 4.1e-97 358.6 245 71.4
HanXRQChr01g0007111 Helianthus annuus HOM05D007481 ORTHO05D009444 6.9e-97 357.8 255 69.4
Ciclev10012584m.g Citrus clementina HOM05D007481 ORTHO05D009444 1.2e-96 357.1 243 69.5
ClCG04G007010 Citrullus lanatus HOM05D007481 ORTHO05D009444 2.6e-96 355.9 244 70.9
Glyma.03G058200 Glycine max HOM05D007481 ORTHO05D009444 3.4e-96 355.5 242 69.8
MSTRG.10219 Avicennia marina HOM05D007481 ORTHO05D009444 4.5e-96 355.1 249 70.3
Nn2g13707 Nelumbo nucifera HOM05D007481 ORTHO05D009444 7.7e-96 354.4 247 70.4
Aa31LG1G23100 Aethionema arabicum HOM05D007481 ORTHO05D009444 1.7e-95 353.2 247 69.6
THA.LOC104816191 Tarenaya hassleriana HOM05D007481 ORTHO05D009444 1.7e-95 353.2 246 71.5
Peaxi162Scf00009g01813 Petunia axillaris HOM05D007481 ORTHO05D009444 2.2e-95 352.8 247 69.6
FAN14G0098 Fragaria x ananassa HOM05D007481 ORTHO05D009444 3.8e-95 352.1 307 59.0
Sopen10g034630 Solanum pennellii HOM05D007481 ORTHO05D009444 3.8e-95 352.1 247 70.0
PGSC0003DMG400011097 Solanum tuberosum HOM05D007481 ORTHO05D009444 5.0e-95 351.7 255 67.8
Sed0020862 Sechium edule HOM05D007481 ORTHO05D009444 6.5e-95 351.3 243 68.7
Medtr4g012440 Medicago truncatula HOM05D007481 ORTHO05D009444 8.5e-95 350.9 249 68.7
Sp6g40760 Schrenkiella parvula HOM05D007481 ORTHO05D009444 3.2e-94 349.0 242 69.4
Solyc10g085160.2 Solanum lycopersicum HOM05D007481 ORTHO05D009444 3.2e-94 349.0 247 69.2
Nitab4.5_0003666g0020 Nicotiana tabacum HOM05D007481 ORTHO05D009444 4.2e-94 348.6 242 71.5
Ca_20231_v3 Cicer arietinum L. HOM05D007481 ORTHO05D009444 5.5e-94 348.2 246 68.3
Lalb_Chr07g0193571 Lupinus albus HOM05D007481 ORTHO05D009444 9.4e-94 347.4 252 65.9
BcaB05g21923 Brassica carinata HOM05D007481 ORTHO05D009444 1.2e-93 347.1 247 67.6
CARHR211840 Cardamine hirsuta HOM05D007481 ORTHO05D009444 1.2e-93 347.1 242 69.8
Migut.L02012 Erythranthe guttata HOM05D007481 ORTHO05D009444 2.1e-93 346.3 244 71.3
Aqoxy2G00902 Aquilegia oxysepala HOM05D007481 ORTHO05D009444 3.6e-93 345.5 248 67.3
AL6G10600 Arabidopsis lyrata HOM05D007481 ORTHO05D009444 3.6e-93 345.5 246 68.7
arahy.Tifrunner.gnm1.ann1.7RHW31 Arachis hypogaea HOM05D007481 ORTHO05D009444 3.6e-93 345.5 249 67.5
Phvul.010G001400 Phaseolus vulgaris HOM05D007481 ORTHO05D009444 3.6e-93 345.5 244 67.2
Carub.0006s0036 Capsella rubella HOM05D007481 ORTHO05D009444 4.6e-93 345.1 242 69.4
PSO801G0715 Papaver somniferum HOM05D007481 ORTHO05D009444 4.6e-93 345.1 256 64.5
Thhalv10014504m.g Eutrema salsugineum HOM05D007481 ORTHO05D009444 7.9e-93 344.4 242 69.0
Psat7g244960 Pisum sativum HOM05D007481 ORTHO05D009444 1.4e-92 343.6 247 66.4
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 5.1e-92 341.7 244 69.7
AT5G01470 Arabidopsis thaliana HOM05D007481 ORTHO05D009444 8.8e-92 340.9 242 68.2
Nitab4.5_0003024g0060 Nicotiana tabacum HOM05D007481 ORTHO05D009444 8.8e-92 340.9 260 67.3
C02p00150 Brassica napus HOM05D007481 ORTHO05D009444 1.1e-91 340.5 243 67.5
TPR.G13336 Trifolium pratense HOM05D007481 ORTHO05D009444 1.1e-91 340.5 252 66.3
Duzib093G0021 Durio zibethinus HOM05D007481 ORTHO05D009444 4.3e-91 338.6 210 75.2
BolC2t06012H Brassica oleracea HOM05D007481 ORTHO05D009444 9.7e-91 337.4 243 66.7
BraA02t04685Z Brassica rapa HOM05D007481 ORTHO05D009444 1.7e-90 336.7 244 67.2
Lj3A953G52 Lonicera japonica HOM05D007481 ORTHO05D009444 4.8e-90 335.1 248 68.5
BcaC03g13078 Brassica carinata HOM05D007481 ORTHO05D009444 6.3e-90 334.7 242 66.9
Sc07g0006570 Simmondsia chinensis HOM05D007481 ORTHO05D009444 8.2e-90 334.3 247 65.6
FAN09G2325 Fragaria x ananassa HOM05D007481 ORTHO05D009444 4.5e-88 328.6 247 65.6
vmacro20262 Vaccinium macrocarpon HOM05D007481 ORTHO05D009444 5.9e-88 328.2 254 67.3
arahy.Tifrunner.gnm1.ann1.6XTR6T Arachis hypogaea HOM05D007481 ORTHO05D009444 7.7e-88 327.8 247 65.6
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.0e-87 327.4 264 61.4
PSO339G5056 Papaver somniferum HOM05D007481 ORTHO05D009444 2.9e-87 325.9 262 61.1
unitig_736.g22787 Utricularia gibba HOM05D007481 ORTHO05D009444 4.4e-83 312.0 236 64.4
FvH4_6g11480 Fragaria vesca HOM05D007481 ORTHO05D009444 1.3e-82 310.5 197 74.6
Rhsim05G0214800 Rhododendron simsii HOM05D007481 ORTHO05D009444 1.3e-82 310.5 306 54.6
ATR0618G339 Amborella trichopoda HOM05D007481 ORTHO05D009444 1.4e-81 307.0 246 61.0
Gohir.A09G165100 Gossypium hirsutum HOM05D007481 ORTHO05D009444 5.3e-81 305.1 195 74.9
TAR633G1799 Trochodendron aralioides HOM05D007481 ORTHO05D009444 3.8e-79 298.9 246 61.8
Lsat_1_v5_gn_5_149561 Lactuca sativa HOM05D007481 ORTHO05D009444 6.5e-79 298.1 245 61.6
Zm00001eb063270 Zea mays HOM05D007481 ORTHO05D009444 4.2e-78 295.4 256 58.2
Hund11009 Selenicereus undatus HOM05D007481 ORTHO05D009444 2.1e-77 293.1 267 57.3
Haze_20985 Corylus avellana HOM05D007481 ORTHO05D009444 1.4e-76 290.4 254 61.8
SEGI_08492 Sequoiadendron giganteum HOM05D007481 ORTHO05D009444 5.2e-76 288.5 280 52.5
MELO3C003292.2 Cucumis melo HOM05D007481 ORTHO05D009444 2.6e-75 286.2 191 70.7
Cpa.g.sc11.154 Carica papaya HOM05D007481 ORTHO05D009444 1.7e-74 283.5 246 61.8
Os03g0826700 Oryza sativa ssp. japonica HOM05D007481 ORTHO05D009444 8.2e-74 281.2 252 57.9
SalBow4G1731 Salvia bowleyana HOM05D007481 ORTHO05D009444 1.5e-70 270.4 195 68.7
Mapoly0103s0024 Marchantia polymorpha HOM05D007481 ORTHO05D009444 2.5e-70 269.6 268 53.7
Pp3c17_21930 Physcomitrium patens HOM05D007481 ORTHO05D009444 4.2e-70 268.9 275 51.3
CDE02G3625 Ceratophyllum demersum HOM05D007481 ORTHO05D009444 2.3e-68 263.1 183 71.0
SMO119G0350 Selaginella moellendorffii HOM05D007481 ORTHO05D009444 3.0e-68 262.7 213 61.0
AagrBONN_evm.TU.Sc2ySwM_228.1780 Anthoceros agrestis HOM05D007481 ORTHO05D009444 2.2e-66 256.5 213 59.6
CBR_g4113 Chara braunii HOM05D007481 ORTHO05D009444 5.5e-62 241.9 283 45.6
FAN14G2270 Fragaria x ananassa HOM05D000872 ORTHO05D000777 4.7e-61 238.8 292 48.3
MBI14_g30737_MAGBIO Magnolia biondii HOM05D007481 ORTHO05D009444 3.7e-58 229.2 254 50.4
DCAR_015418 Daucus carota HOM05D007481 ORTHO05D009444 2.0e-51 206.8 134 73.9
VMungo0331G0457 Vigna mungo HOM05D007481 ORTHO05D009444 1.4e-49 200.7 135 68.1
HPP92_003771 Vanilla planifolia HOM05D007481 ORTHO05D009444 1.7e-47 193.7 181 58.6
Atru.chr8.2241 Acer truncatum HOM05D007481 ORTHO05D009444 5.0e-47 192.2 118 76.3
EL10Ac5g12562 Beta vulgaris HOM05D007481 ORTHO05D009444 9.9e-27 124.8 92 66.3
Oeu006297.1 Olea europaea HOM05D007481 ORTHO05D009444 2.2e-26 123.6 85 74.1
Eucgr.B02818 Eucalyptus grandis HOM05D007481 ORTHO05D009444 2.1e-24 117.1 91 60.4
AUR62030437 Chenopodium quinoa HOM05D007481 ORTHO05D009444 1.2e-11 74.7 40 77.5
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 3.5e-08 63.2 196 27.0
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 1.3e-07 61.2 125 27.2
FAN19G0062 Fragaria x ananassa HOM05D005677 ORTHO05D006966 8.7e-07 58.5 196 27.0
FvH4_1g13310 Fragaria vesca HOM05D005677 ORTHO05D006966 1.5e-06 57.8 196 27.6
FAN26G2780 Fragaria x ananassa HOM05D005677 ORTHO05D006966 1.5e-06 57.8 196 27.6
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 2.5e-06 57.0 174 24.1
Pp3c26_2100 Physcomitrium patens HOM05D001602 ORTHO05D001470 9.6e-06 55.1 121 29.8


User provided reference genes

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