Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 4.6e-278 960.7 521 100.0
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.5e-247 859.4 521 90.2
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.2e-219 765.8 522 83.0
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 4.7e-153 545.4 526 62.4
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 1.1e-143 514.2 519 61.7
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 4.4e-143 512.3 507 62.3
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 3.1e-141 506.1 522 60.2
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 8.0e-137 491.5 527 58.6
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.0e-136 491.1 527 58.4
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.3e-134 484.2 526 58.4
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.0e-132 476.9 518 57.7
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.3e-131 474.2 524 58.2
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.7e-131 473.8 516 57.6
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.1e-125 452.6 522 54.8
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.2e-124 451.1 515 56.1
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 2.7e-124 449.9 462 61.9
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 7.7e-124 448.4 522 54.6
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 4.7e-121 439.1 515 55.3
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 5.2e-120 435.6 529 55.8
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.2e-119 434.5 488 57.0
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 3.5e-116 422.9 516 50.8
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.7e-115 420.6 510 52.4
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.9e-115 419.5 521 54.3
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 3.9e-115 419.5 514 54.3
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 8.6e-115 418.3 531 49.0
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.5e-114 417.5 522 52.9
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 4.9e-110 402.5 507 52.3
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 1.4e-109 401.0 510 48.8
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 7.8e-108 395.2 508 48.4
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.2e-105 387.9 520 51.7
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 4.7e-105 386.0 526 52.1
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 4.7e-105 386.0 396 57.6
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.9e-102 375.9 541 46.8
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.5e-100 369.8 518 49.0
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 3.5e-100 369.8 543 48.1
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 7.8e-100 368.6 547 47.9
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 3.0e-99 366.7 527 48.0
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.1e-98 364.8 519 51.4
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.2e-95 354.8 434 55.5
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 2.0e-95 354.0 505 49.5
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 3.4e-95 353.2 518 50.8
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 5.8e-95 352.4 527 47.2
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 9.9e-95 351.7 520 48.3
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 7.8e-92 342.0 502 46.6
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 5.1e-91 339.3 524 48.7
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.9e-90 337.4 520 45.8
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 9.6e-90 335.1 518 46.1
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.8e-89 333.6 416 49.3
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 2.4e-88 330.5 511 46.4
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 2.4e-88 330.5 512 45.3
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 6.8e-88 328.9 543 44.2
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.5e-87 327.8 512 43.0
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 3.4e-87 326.6 518 46.1
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 5.8e-87 325.9 537 46.0
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.3e-86 324.7 519 44.5
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.2e-86 323.9 512 43.8
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 7.1e-85 318.9 508 43.3
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 9.3e-85 318.5 513 43.5
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 9.3e-85 318.5 526 46.4
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 6.0e-84 315.8 520 43.8
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.0e-83 315.1 437 45.5
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.3e-83 314.7 512 44.3
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 2.3e-83 313.9 453 48.8
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 3.9e-83 313.2 516 42.4
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 1.1e-82 311.6 508 44.1
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.1e-82 311.6 511 44.8
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 2.5e-82 310.5 526 44.9
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.3e-81 308.1 508 45.3
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 2.1e-81 307.4 536 42.7
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 6.2e-81 305.8 513 43.7
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.2e-81 305.8 524 43.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 6.2e-81 305.8 516 43.6
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.1e-80 305.1 515 43.5
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.8e-80 304.3 529 44.0
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 5.3e-80 302.8 536 43.1
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 1.5e-79 301.2 521 44.3
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 3.4e-79 300.1 518 46.5
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 4.4e-79 299.7 508 44.1
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 5.4e-77 292.7 531 44.8
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 7.9e-76 288.9 524 39.9
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 9.6e-74 282.0 511 43.1
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.3e-73 281.6 522 42.7
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.3e-73 281.6 479 43.2
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 1.6e-73 281.2 534 40.3
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.6e-73 281.2 510 40.8
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 2.4e-72 277.3 525 42.5
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.0e-71 274.2 492 42.9
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.0e-71 274.2 508 39.8
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.9e-70 270.4 508 38.8
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.4e-69 268.1 528 40.2
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 2.4e-69 267.3 520 43.1
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 7.1e-69 265.8 448 46.7
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.6e-68 264.6 458 43.0
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.3e-67 260.8 539 41.6
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.6e-65 254.6 528 40.7
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.1e-64 251.9 525 40.8
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 5.3e-64 249.6 465 40.6
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 6.9e-64 249.2 484 44.0
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 9.0e-64 248.8 531 40.7
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 7.6e-63 245.7 477 39.6
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 2.9e-62 243.8 515 35.9
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 3.2e-61 240.4 442 41.2
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 4.2e-61 240.0 485 41.9
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.6e-60 238.0 506 40.1
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.6e-60 238.0 424 41.7
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 3.5e-60 236.9 520 37.7
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 6.0e-60 236.1 522 41.6
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 1.8e-59 234.6 442 40.7
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 8.7e-59 232.3 447 41.4
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.5e-58 231.5 438 40.2
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.9e-58 231.1 441 39.9
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 2.5e-58 230.7 441 39.5
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 4.8e-57 226.5 510 36.7
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 2.0e-55 221.1 139 81.3
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 4.5e-55 219.9 438 39.5
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 5.8e-55 219.5 452 40.0
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 5.5e-53 213.0 450 40.2
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.3e-51 208.4 509 40.1
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 3.9e-51 206.8 535 35.0
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 1.5e-50 204.9 456 40.8
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 4.3e-50 203.4 459 40.7
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.8e-49 199.9 517 33.3
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 8.2e-49 199.1 462 37.2
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 3.1e-48 197.2 469 40.3
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.5e-47 194.9 256 46.9
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.6e-47 194.1 480 36.5
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 7.7e-47 192.6 450 38.9
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 2.9e-46 190.7 464 37.7
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 6.5e-46 189.5 512 34.2
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 3.0e-43 180.6 515 34.6
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 8.8e-43 179.1 424 36.6
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 1.1e-42 178.7 383 38.4
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 9.7e-42 175.6 192 51.0
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 9.7e-42 175.6 477 34.0
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.1e-40 172.2 427 39.3
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 7.7e-39 166.0 351 36.8
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 6.5e-38 162.9 180 48.9
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 1.9e-37 161.4 419 34.1
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 2.5e-37 161.0 419 34.1
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 7.2e-37 159.5 360 34.7
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.2e-36 158.7 418 33.7
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 4.4e-34 150.2 449 33.9
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 1.3e-33 148.7 143 57.3
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 8.2e-33 146.0 139 61.9
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.7e-30 138.3 408 31.9
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 1.9e-29 134.8 494 31.2
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 5.5e-29 133.3 131 55.7
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.8e-27 128.3 151 51.7
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 4.1e-24 117.1 130 63.1
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 2.0e-23 114.8 366 31.1
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 7.7e-23 112.8 502 29.1
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 1.2e-20 105.5 295 34.2
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 2.3e-19 101.3 523 26.2
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 9.8e-18 95.9 318 30.8
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 1.3e-17 95.5 199 38.2
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 4.1e-16 90.5 110 45.5
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.3e-14 85.5 106 42.5
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 2.9e-14 84.3 465 27.5
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 6.8e-11 73.2 125 37.6
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 8.8e-11 72.8 61 65.6
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.5e-10 72.0 142 35.9
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 5.7e-10 70.1 153 32.7
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 9.8e-10 69.3 223 26.9
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 1.7e-09 68.6 56 60.7
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.7e-09 68.6 227 28.2
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 2.8e-09 67.8 160 30.6
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 2.4e-08 64.7 68 50.0
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 7.0e-08 63.2 430 26.7
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.6e-07 62.0 388 26.8
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.6e-07 62.0 395 27.8
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 4.5e-07 60.5 323 28.2
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 5.9e-07 60.1 45 60.0
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 1.3e-06 58.9 132 34.1
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 3.8e-06 57.4 123 30.9


User provided reference genes

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