Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 2.5e-47 191.8 100 100.0
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 8.3e-43 176.8 99 92.9
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.3e-35 152.9 99 80.8
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.8e-29 132.5 101 73.3
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 9.0e-29 130.2 100 73.0
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 6.0e-25 117.5 99 64.6
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 6.0e-25 117.5 99 64.6
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 6.6e-24 114.0 101 68.3
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.7e-24 113.6 105 68.6
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.5e-23 112.8 105 61.9
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.9e-23 112.5 100 69.0
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 2.8e-22 108.6 105 65.7
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 3.6e-22 108.2 100 61.0
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 6.2e-22 107.5 89 69.7
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 1.1e-21 106.7 85 68.2
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 1.1e-21 106.7 101 68.3
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 5.3e-21 104.4 102 61.8
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 6.9e-21 104.0 100 63.0
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 9.0e-21 103.6 100 63.0
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 9.0e-21 103.6 107 63.6
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 1.2e-20 103.2 100 60.0
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.2e-20 103.2 101 61.4
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 2.0e-20 102.4 96 63.5
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 2.0e-20 102.4 100 60.0
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 2.0e-20 102.4 99 59.6
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 5.8e-20 100.9 102 60.8
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 5.8e-20 100.9 85 65.9
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 9.9e-20 100.1 105 59.0
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 2.2e-19 99.0 107 64.5
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 6.4e-19 97.4 70 70.0
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 6.4e-19 97.4 100 61.0
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.1e-18 96.7 99 60.6
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 1.9e-18 95.9 102 58.8
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 1.9e-18 95.9 96 58.3
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 1.9e-18 95.9 101 59.4
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 3.2e-18 95.1 99 57.6
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 2.1e-17 92.4 100 56.0
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 1.8e-16 89.4 102 57.8
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 3.9e-16 88.2 97 53.6
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 5.1e-16 87.8 97 50.5
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 8.7e-16 87.0 89 55.1
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.9e-15 85.9 96 51.0
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 4.3e-15 84.7 106 57.5
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 4.3e-15 84.7 106 57.5
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 7.4e-15 84.0 102 54.9
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.3e-14 83.2 79 55.7
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 1.6e-14 82.8 99 51.5
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.6e-14 82.8 89 52.8
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 2.1e-14 82.4 100 52.0
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 2.8e-14 82.0 101 54.5
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 3.7e-14 81.6 101 55.4
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 4.8e-14 81.3 101 49.5
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 6.2e-14 80.9 100 55.0
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 1.1e-13 80.1 105 49.5
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 1.8e-13 79.3 101 54.5
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 1.8e-13 79.3 101 53.5
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 2.4e-13 79.0 101 55.4
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 2.4e-13 79.0 105 56.2
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 4.0e-13 78.2 96 47.9
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 5.3e-13 77.8 99 54.5
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 1.5e-12 76.3 96 46.9
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 2.6e-12 75.5 101 52.5
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 3.4e-12 75.1 101 51.5
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 4.5e-12 74.7 95 51.6
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 4.5e-12 74.7 92 51.1
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 7.6e-12 73.9 46 76.1
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 1.3e-11 73.2 97 48.5
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 6.5e-11 70.9 101 48.5
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 6.5e-11 70.9 75 52.0
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 2.5e-10 68.9 101 48.5
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 4.2e-10 68.2 98 46.9
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 4.2e-10 68.2 84 53.6
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 5.5e-10 67.8 85 49.4
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 5.5e-10 67.8 100 50.0
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 9.3e-10 67.0 92 44.6
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 1.2e-09 66.6 55 58.2
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 1.2e-09 66.6 47 63.8
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 3.5e-09 65.1 81 45.7
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 7.9e-09 63.9 99 48.5
Thecc.09G313900 Theobroma cacao HOM05D007574 ORTHO05D007552 1.0e-08 63.5 67 52.2
C04p10180 Brassica napus HOM05D009505 ORTHO05D007552 1.3e-08 63.2 85 48.2
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 1.3e-08 63.2 100 44.0
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 2.3e-08 62.4 101 47.5
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 3.0e-08 62.0 101 47.5
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 3.9e-08 61.6 101 47.5
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 5.1e-08 61.2 85 44.7
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 6.7e-08 60.8 100 44.0
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 6.7e-08 60.8 85 47.1
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 1.1e-07 60.1 94 44.7
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 1.9e-07 59.3 100 42.0
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 2.5e-07 58.9 94 43.6
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 2.5e-07 58.9 94 43.6
COL.COLO4_18585 Corchorus olitorius HOM05D007574 ORTHO05D007552 3.3e-07 58.5 68 48.5
THA.LOC104824525 Tarenaya hassleriana HOM05D009505 ORTHO05D007552 3.3e-07 58.5 97 45.4
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 4.3e-07 58.2 86 45.3
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 4.3e-07 58.2 46 58.7
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 4.3e-07 58.2 85 44.7
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 4.3e-07 58.2 94 40.4
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 7.4e-07 57.4 98 45.9
BcaB02g09253 Brassica carinata HOM05D009505 ORTHO05D007552 9.6e-07 57.0 85 44.7
BcaB02g09254 Brassica carinata HOM05D009505 ORTHO05D007552 9.6e-07 57.0 85 44.7
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 9.6e-07 57.0 98 40.8
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 1.3e-06 56.6 83 49.4
Prupe.6G068600 Prunus persica HOM05D007574 ORTHO05D007552 1.6e-06 56.2 88 39.8
Ah.01g023650 Amaranthus hybridus HOM05D007574 ORTHO05D007552 3.7e-06 55.1 101 41.6
Thhalv10015172m.g Eutrema salsugineum HOM05D009057 ORTHO05D011698 3.7e-06 55.1 77 49.4
Sed0004672 Sechium edule HOM05D039850 ORTHO05D034976 3.7e-06 55.1 103 43.7
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 6.2e-06 54.3 94 43.6


User provided reference genes

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