Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 1.7e-199 699.1 362 100.0
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 1.2e-179 633.3 362 90.3
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 3.9e-122 442.2 362 64.4
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 4.0e-111 405.6 362 59.9
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 5.8e-110 401.7 362 59.1
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 6.4e-109 398.3 356 60.4
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 7.3e-105 384.8 361 56.2
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 6.2e-104 381.7 355 55.5
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 1.2e-99 367.5 361 56.0
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 7.8e-99 364.8 357 57.4
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.9e-98 362.5 353 55.2
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 8.6e-98 361.3 358 54.7
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 1.5e-97 360.5 350 56.3
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 2.5e-97 359.8 364 55.2
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 7.3e-97 358.2 353 53.3
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.2e-96 357.5 353 55.0
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.6e-96 357.1 362 53.0
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 2.8e-96 356.3 360 54.7
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 6.2e-96 355.1 348 56.6
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 8.1e-96 354.8 357 54.6
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.1e-95 354.4 351 55.6
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 2.4e-95 353.2 355 54.9
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 4.0e-95 352.4 353 55.0
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 6.9e-95 351.7 351 55.6
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 1.5e-94 350.5 350 54.3
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 2.0e-94 350.1 363 52.6
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 2.6e-94 349.7 355 57.5
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 2.6e-94 349.7 358 54.7
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 5.8e-94 348.6 351 55.0
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 9.9e-94 347.8 349 53.3
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 1.7e-93 347.1 363 54.3
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 5.4e-92 342.0 365 51.8
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 5.4e-92 342.0 399 50.6
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 1.0e-90 337.8 336 54.2
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 1.6e-88 330.5 363 49.6
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 4.8e-88 328.9 355 51.0
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 1.8e-87 327.0 356 53.1
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 6.9e-87 325.1 352 51.7
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 4.5e-86 322.4 357 51.5
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 1.7e-85 320.5 353 52.7
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 4.9e-85 318.9 353 51.8
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 6.4e-85 318.5 353 50.4
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 1.9e-84 317.0 363 49.3
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 3.2e-84 316.2 361 47.4
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 1.6e-83 313.9 361 51.0
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 2.7e-83 313.2 358 51.1
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 3.5e-83 312.8 364 48.1
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 1.0e-82 311.2 363 47.7
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 1.8e-82 310.5 356 48.9
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 3.9e-82 309.3 345 49.6
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 5.1e-82 308.9 362 48.9
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 1.5e-81 307.4 318 54.1
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 1.9e-81 307.0 361 48.2
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 2.4e-79 300.1 358 51.1
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 3.4e-78 296.2 354 48.0
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 1.7e-77 293.9 363 49.6
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 2.9e-77 293.1 392 45.2
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 3.8e-77 292.7 346 47.7
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 1.4e-76 290.8 353 45.0
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 1.9e-76 290.4 355 48.7
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 5.5e-76 288.9 355 46.8
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 2.5e-73 280.0 369 45.8
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 4.3e-73 279.3 354 45.2
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 1.8e-71 273.9 345 44.9
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 4.0e-71 272.7 350 46.0
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 6.9e-71 271.9 350 45.4
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.2e-70 271.2 352 45.5
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 1.7e-69 267.3 351 44.7
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 3.8e-69 266.2 353 44.2
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 4.9e-69 265.8 350 44.3
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 6.5e-69 265.4 308 49.0
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 1.1e-68 264.6 346 45.1
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 1.1e-68 264.6 393 41.7
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 1.4e-68 264.2 351 45.0
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 3.2e-68 263.1 367 43.3
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 4.2e-68 262.7 351 45.0
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 5.5e-68 262.3 352 44.9
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 5.5e-68 262.3 352 44.3
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 1.2e-67 261.2 357 42.3
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 1.6e-67 260.8 350 44.6
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 2.7e-67 260.0 462 38.3
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 6.0e-67 258.8 353 44.5
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 1.0e-66 258.1 353 44.8
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 6.7e-66 255.4 354 42.7
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 1.5e-65 254.2 345 43.5
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 1.9e-65 253.8 313 47.6
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 5.7e-65 252.3 264 51.1
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 7.4e-65 251.9 351 43.6
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 1.6e-64 250.8 287 50.2
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.2e-64 250.4 281 49.8
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 5.3e-63 245.7 335 42.7
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 3.8e-61 239.6 367 40.9
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 6.5e-61 238.8 371 41.8
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 4.2e-60 236.1 209 61.2
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 6.1e-59 232.3 355 41.7
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 5.1e-58 229.2 355 42.0
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 2.8e-56 223.4 286 46.5
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 2.8e-56 223.4 370 37.3
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 9.1e-55 218.4 284 44.0
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.2e-54 218.0 350 41.4
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 1.2e-54 218.0 318 42.1
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 1.0e-53 214.9 308 40.6
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 1.1e-52 211.5 274 45.6
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 2.5e-52 210.3 369 34.4
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 1.6e-51 207.6 356 40.2
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.4e-50 204.5 208 54.8
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 6.3e-48 195.7 190 52.6
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 6.9e-47 192.2 351 37.0
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 7.7e-46 188.7 318 36.5
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 1.0e-45 188.3 192 51.0
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 2.2e-45 187.2 320 40.9
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 6.5e-45 185.7 362 35.6
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 9.4e-44 181.8 359 34.3
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 8.8e-42 175.3 255 42.4
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 2.8e-40 170.2 266 43.6
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 2.8e-40 170.2 266 43.6
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 2.8e-40 170.2 266 43.6
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 2.6e-38 163.7 127 64.6
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 6.5e-37 159.1 227 45.8
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 8.5e-37 158.7 213 42.7
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 3.2e-36 156.8 251 43.0
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 2.3e-34 150.6 215 45.1
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 2.4e-31 140.6 297 33.7
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 5.9e-30 136.0 163 48.5
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 4.4e-25 119.8 165 45.5
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 1.8e-23 114.4 407 26.0
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 4.5e-22 109.8 143 42.0
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 5.0e-21 106.3 101 49.5
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 1.5e-20 104.8 393 25.4
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 6.1e-19 99.4 97 56.7
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 6.8e-18 95.9 93 54.8
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 6.6e-13 79.3 66 57.6
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 2.5e-12 77.4 66 56.1
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 4.3e-12 76.6 200 29.5
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 9.5e-12 75.5 232 23.7
AagrBONN_evm.TU.Sc2ySwM_344.4450 Anthoceros agrestis HOM05D034800 ORTHO05D006884 3.0e-10 70.5 381 23.4
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 4.0e-10 70.1 50 66.0
Sabra18G0129100 Salix brachista HOM05D000311 ORTHO05D000183 3.7e-08 63.5 38 76.3
Sabra18G0125400 Salix brachista HOM05D000311 ORTHO05D000183 6.4e-08 62.8 37 78.4
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 5.4e-07 59.7 73 45.2
Ah.13g066730 Amaranthus hybridus HOM05D014553 ORTHO05D018255 7.0e-07 59.3 42 66.7
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 3.5e-06 57.0 150 33.3


User provided reference genes

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