Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 2.8e-136 489.2 367 100.0
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.3e-117 427.2 368 92.7
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 2.4e-95 353.2 368 83.2
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 8.5e-77 291.6 326 81.3
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 2.4e-71 273.5 368 68.2
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 4.1e-71 272.7 378 69.8
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 7.7e-70 268.5 374 61.5
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 3.8e-69 266.2 369 68.3
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 8.6e-69 265.0 371 69.8
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.5e-68 264.2 371 61.7
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 2.5e-68 263.5 371 73.9
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 7.2e-68 261.9 366 66.4
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 9.5e-68 261.5 369 68.8
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 1.6e-67 260.8 380 67.4
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 2.8e-67 260.0 373 67.6
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 6.1e-67 258.8 373 69.2
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 1.0e-66 258.1 370 67.8
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.8e-66 257.3 377 65.5
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 2.3e-66 256.9 373 72.1
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 5.2e-66 255.8 371 62.8
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 5.2e-66 255.8 372 71.5
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 9.8e-65 251.5 372 53.0
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 6.3e-64 248.8 374 61.8
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 8.3e-64 248.4 329 77.5
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 1.1e-63 248.1 371 66.6
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.1e-63 246.5 371 61.2
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 4.1e-63 246.1 352 65.1
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.7e-62 243.4 371 60.6
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 4.5e-62 242.7 365 63.0
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 5.9e-62 242.3 367 59.9
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 5.9e-62 242.3 372 65.9
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 7.8e-62 241.9 348 71.3
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 7.8e-62 241.9 374 60.7
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 1.7e-61 240.7 370 63.5
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 2.3e-61 240.4 371 70.6
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 3.8e-61 239.6 380 68.7
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 5.0e-61 239.2 381 69.3
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.1e-60 238.0 348 71.3
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 1.5e-60 237.7 369 67.5
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 1.9e-60 237.3 352 63.4
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 9.5e-60 235.0 349 68.8
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 2.1e-59 233.8 368 64.7
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 8.0e-59 231.9 322 69.9
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 8.0e-59 231.9 344 69.2
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 8.0e-59 231.9 344 69.5
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 4.0e-58 229.6 376 60.1
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 4.0e-58 229.6 367 68.1
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 5.2e-58 229.2 347 68.3
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.2e-57 228.0 367 60.5
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.5e-57 227.6 352 67.0
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 2.6e-57 226.9 348 72.7
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 3.4e-57 226.5 369 64.2
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 7.5e-57 225.3 369 67.2
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 1.3e-56 224.6 340 63.8
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 2.2e-56 223.8 369 59.6
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.9e-56 223.4 380 59.7
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 8.3e-56 221.9 344 67.7
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 8.3e-56 221.9 367 66.5
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 1.1e-55 221.5 344 67.4
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 1.1e-55 221.5 344 67.4
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 1.1e-55 221.5 344 67.4
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 1.1e-55 221.5 344 67.4
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.4e-55 221.1 323 73.4
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.4e-55 221.1 361 60.7
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 1.8e-55 220.7 385 59.7
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.2e-55 219.9 344 67.2
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 4.1e-55 219.5 378 49.2
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 4.1e-55 219.5 380 59.7
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 4.1e-55 219.5 371 66.3
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 5.4e-55 219.2 344 66.9
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 2.0e-54 217.2 302 73.2
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 2.7e-54 216.9 370 57.6
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 6.0e-54 215.7 342 65.2
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 8.6e-53 211.8 354 61.9
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 8.6e-53 211.8 368 65.5
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 2.5e-52 210.3 369 66.1
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 2.5e-52 210.3 341 70.7
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 5.6e-52 209.1 373 64.3
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 5.6e-52 209.1 369 66.1
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 7.3e-52 208.8 346 52.3
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.6e-51 207.6 375 61.3
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 2.1e-51 207.2 347 65.7
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 2.8e-51 206.8 335 69.9
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 3.6e-51 206.5 335 66.3
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 6.2e-51 205.7 295 74.9
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 1.8e-50 204.1 328 61.0
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 5.2e-50 202.6 349 66.2
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 8.9e-50 201.8 365 61.4
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 8.9e-50 201.8 343 67.3
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 1.2e-49 201.4 374 57.0
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 1.5e-49 201.1 355 67.9
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 2.6e-49 200.3 356 54.8
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 1.3e-48 198.0 330 67.9
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 1.3e-48 198.0 368 66.3
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 2.9e-48 196.8 368 58.7
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 1.1e-47 194.9 368 62.8
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 1.4e-47 194.5 363 66.4
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 5.4e-47 192.6 378 59.0
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 2.7e-46 190.3 378 64.6
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 3.5e-46 189.9 366 60.7
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 4.6e-46 189.5 366 60.7
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 6.0e-46 189.1 336 69.3
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 6.0e-46 189.1 402 43.5
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 3.0e-45 186.8 305 67.9
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 3.3e-44 183.3 334 57.8
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 3.3e-44 183.3 334 57.8
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 5.6e-44 182.6 343 68.2
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 9.5e-44 181.8 353 66.9
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 6.2e-43 179.1 265 81.1
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.8e-42 177.6 342 56.4
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 2.3e-42 177.2 375 60.3
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 3.1e-42 176.8 351 59.8
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 4.0e-42 176.4 349 53.0
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 5.2e-42 176.0 349 65.3
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 6.8e-42 175.6 313 65.2
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 1.5e-41 174.5 313 64.9
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 1.5e-41 174.5 345 63.2
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.5e-41 174.5 370 60.0
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 2.6e-41 173.7 345 58.8
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 4.4e-41 172.9 304 62.5
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 9.9e-41 171.8 345 62.3
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.3e-40 171.4 347 62.0
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 2.2e-40 170.6 345 58.0
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 2.9e-40 170.2 343 64.7
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.9e-40 170.2 345 64.6
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 1.9e-39 167.5 374 59.9
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 3.2e-39 166.8 389 54.0
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 4.1e-39 166.4 345 64.3
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 7.1e-39 165.6 335 66.3
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 7.1e-39 165.6 335 66.3
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 7.1e-39 165.6 355 64.5
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 7.1e-39 165.6 380 53.4
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.6e-38 164.5 347 63.4
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 2.7e-38 163.7 334 65.9
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 3.5e-38 163.3 250 75.2
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 1.7e-37 161.0 370 54.3
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 1.7e-37 161.0 335 56.4
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 3.0e-37 160.2 306 69.3
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 5.1e-37 159.5 347 62.2
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.1e-36 158.3 389 60.2
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 2.5e-36 157.1 364 62.1
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 7.3e-36 155.6 335 63.3
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 1.6e-35 154.5 375 52.5
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 8.1e-35 152.1 347 57.1
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 6.8e-34 149.1 337 59.3
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 2.6e-33 147.1 359 58.8
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 3.4e-33 146.7 307 67.4
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 9.9e-33 145.2 336 61.9
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 4.9e-32 142.9 372 46.2
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 6.4e-32 142.5 347 54.5
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.9e-31 141.0 181 50.8
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 5.4e-31 139.4 371 53.6
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 5.4e-31 139.4 371 53.6
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 5.4e-31 139.4 371 53.6
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 1.2e-30 138.3 270 64.1
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 2.7e-30 137.1 336 57.4
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 4.6e-30 136.3 336 57.4
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 6.0e-30 136.0 342 59.9
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 1.0e-29 135.2 329 37.1
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 1.3e-29 134.8 349 57.0
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 1.9e-28 131.0 280 51.1
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.6e-27 127.9 340 45.9
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 2.8e-27 127.1 338 60.1
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 6.2e-27 125.9 371 42.0
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 2.4e-26 124.0 226 54.0
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 9.0e-26 122.1 335 54.9
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 1.2e-25 121.7 366 52.2
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 1.5e-25 121.3 304 58.2
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 4.9e-24 116.3 343 54.8
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 8.4e-24 115.5 183 47.5
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 1.4e-23 114.8 330 37.9
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 4.2e-23 113.2 92 66.3
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 1.2e-22 111.7 119 52.9
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 1.2e-22 111.7 119 52.9
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 6.0e-22 109.4 170 60.6
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 1.3e-21 108.2 119 52.1
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 2.1e-19 100.9 223 49.3
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 2.1e-19 100.9 178 56.2
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 2.8e-19 100.5 257 59.1
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 1.8e-18 97.8 196 54.6
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 5.3e-18 96.3 387 53.0
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.2e-16 90.9 245 66.1
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 8.1e-11 72.4 100 46.0
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 2.4e-10 70.9 116 51.7
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 6.4e-08 62.8 120 35.8


User provided reference genes

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