Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 3.1e-170 601.7 296 100.0
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 9.7e-156 553.5 296 91.9
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 9.1e-146 520.4 296 85.8
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.6e-126 455.3 298 75.5
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.4e-125 453.4 298 75.2
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.8e-125 453.0 285 76.8
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 1.5e-124 449.9 299 74.6
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 2.6e-124 449.1 297 74.7
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 6.4e-123 444.5 295 75.3
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 5.4e-122 441.4 295 73.6
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 9.2e-122 440.7 300 74.0
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 2.7e-121 439.1 295 73.9
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 2.7e-121 439.1 299 73.2
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 1.0e-120 437.2 289 72.0
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 3.0e-120 435.6 297 73.7
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 3.9e-120 435.3 292 74.0
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 2.5e-119 432.6 300 72.7
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 3.3e-119 432.2 294 73.1
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 5.6e-119 431.4 294 72.8
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 7.3e-119 431.0 292 73.6
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 2.8e-118 429.1 294 73.5
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 6.2e-118 427.9 256 79.3
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 8.0e-118 427.6 295 70.5
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.0e-117 427.2 291 71.8
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.0e-117 427.2 290 73.4
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 4.0e-117 425.2 305 70.8
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 5.2e-117 424.9 296 72.3
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 5.2e-117 424.9 287 73.9
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 6.8e-117 424.5 282 72.7
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.8e-117 424.5 290 73.1
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 2.0e-116 422.9 297 71.4
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 1.7e-115 419.9 286 71.3
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 1.7e-115 419.9 287 73.2
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 2.9e-115 419.1 301 70.4
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 1.1e-114 417.2 286 72.0
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.9e-114 416.4 297 70.7
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.9e-114 416.4 297 70.7
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 3.2e-114 415.6 290 70.3
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 4.1e-114 415.2 297 70.4
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 5.4e-114 414.8 300 69.7
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 7.0e-114 414.5 291 69.1
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.6e-113 413.3 278 73.0
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.6e-113 413.3 295 68.5
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 2.0e-113 412.9 297 69.7
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 2.7e-113 412.5 290 70.3
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 4.6e-113 411.8 264 75.0
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 4.6e-113 411.8 288 70.1
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 6.0e-113 411.4 287 72.8
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 1.0e-112 410.6 298 67.1
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.3e-112 410.2 293 70.0
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.3e-112 409.5 294 68.7
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 6.6e-112 407.9 294 70.4
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 8.6e-112 407.5 298 68.5
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.9e-111 406.4 305 68.9
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 2.5e-111 406.0 291 68.0
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 5.6e-111 404.8 298 67.8
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 9.5e-111 404.1 292 69.9
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 2.1e-110 402.9 307 66.8
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 2.1e-110 402.9 266 74.8
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 3.6e-110 402.1 295 67.5
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 3.6e-110 402.1 302 67.5
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 1.1e-109 400.6 298 67.8
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 2.3e-109 399.4 302 65.9
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 4.0e-109 398.7 299 66.6
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 6.8e-109 397.9 299 67.2
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 1.5e-108 396.7 293 68.9
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 2.0e-108 396.4 299 66.9
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 9.8e-108 394.0 297 67.0
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 1.3e-107 393.7 301 66.1
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.7e-107 393.3 243 78.2
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 3.7e-107 392.1 293 66.9
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 6.4e-107 391.3 293 67.9
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 5.4e-106 388.3 285 68.1
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.2e-105 387.1 290 64.5
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 1.2e-105 387.1 274 68.6
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 1.7e-104 383.3 285 65.6
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.3e-104 382.9 292 68.2
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 3.6e-102 375.6 245 75.1
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 4.7e-102 375.2 262 68.7
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.8e-101 373.2 234 77.8
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 3.1e-101 372.5 297 64.6
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 1.2e-100 370.5 278 65.5
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 4.9e-99 365.2 344 57.6
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.2e-97 360.5 236 76.3
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 1.1e-95 354.0 215 80.5
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.5e-95 353.6 284 60.9
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 9.6e-95 350.9 233 73.4
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.1e-93 347.4 264 63.6
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.4e-93 346.3 256 65.2
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 2.6e-92 342.8 264 63.6
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 7.6e-92 341.3 380 49.5
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 1.3e-91 340.5 283 59.4
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 3.3e-87 325.9 256 59.8
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 1.6e-86 323.6 289 54.7
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 2.1e-86 323.2 233 66.1
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 6.2e-86 321.6 282 58.2
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 4.0e-85 318.9 217 69.1
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 1.2e-84 317.4 278 56.8
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 2.6e-84 316.2 246 62.6
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 2.2e-83 313.2 272 58.8
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 2.4e-82 309.7 239 64.9
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 4.2e-82 308.9 259 59.5
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 5.4e-82 308.5 261 58.6
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 5.4e-82 308.5 261 58.6
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 5.4e-82 308.5 261 58.6
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 9.3e-82 307.8 259 58.7
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.6e-81 307.0 270 57.8
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 2.1e-81 306.6 269 57.2
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 2.7e-81 306.2 254 61.0
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 6.0e-81 305.1 266 59.4
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.5e-79 300.4 206 72.3
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.5e-79 299.7 219 66.7
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 2.0e-76 290.0 257 58.4
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 4.2e-74 282.3 284 50.0
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.5e-71 273.9 262 53.1
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 2.5e-71 273.1 231 58.9
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 4.5e-68 262.3 204 63.2
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 4.6e-65 252.3 288 48.6
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 2.0e-60 236.9 284 48.6
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 2.5e-58 229.9 226 50.4
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 2.3e-56 223.4 231 48.5
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 3.7e-54 216.1 139 73.4
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 1.7e-51 207.2 191 58.1
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 7.2e-50 201.8 223 43.9
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 2.4e-45 186.8 147 63.9
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 6.3e-38 162.2 288 35.8
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.7e-33 146.7 88 83.0
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 2.8e-30 136.7 127 52.8
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 5.5e-26 122.5 216 34.3
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 7.0e-21 105.5 162 38.3
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 3.5e-20 103.2 173 35.8
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 5.9e-20 102.4 77 62.3
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.4e-16 91.3 120 48.3
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 1.5e-15 87.8 48 85.4
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 2.6e-15 87.0 60 63.3
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 1.7e-14 84.3 96 49.0
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 4.5e-12 76.3 43 74.4
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 2.6e-07 60.5 245 25.3
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 5.7e-07 59.3 40 60.0


User provided reference genes

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