Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 0.0e+00 1076.2 574 100.0
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 6.1e-263 910.6 570 85.1
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 2.7e-234 815.5 590 76.8
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.1e-232 810.1 590 76.1
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 2.8e-223 778.9 570 73.7
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 9.5e-200 700.7 570 67.4
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 2.0e-197 693.0 573 66.7
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 2.2e-196 689.5 564 69.1
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.4e-195 686.8 563 66.3
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.4e-195 686.8 439 85.6
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 6.0e-194 681.4 569 67.0
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 1.0e-193 680.6 562 65.8
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.5e-192 676.8 572 65.6
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 1.2e-191 673.7 561 65.6
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 2.1e-191 672.9 573 65.4
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 1.4e-190 670.2 574 65.2
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.7e-188 663.3 570 62.8
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 5.4e-187 658.3 571 62.7
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 2.7e-186 656.0 570 63.7
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 1.0e-185 654.1 566 64.8
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.7e-185 653.3 570 63.7
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.3e-185 652.9 561 64.2
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 3.0e-185 652.5 573 64.0
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 5.1e-185 651.7 570 63.2
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 6.6e-185 651.4 565 64.1
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 1.6e-183 646.7 571 63.2
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 2.1e-183 646.4 571 62.5
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 3.6e-183 645.6 571 62.2
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 2.6e-181 639.4 563 63.8
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 9.9e-181 637.5 571 62.3
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 2.4e-179 632.9 578 59.9
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 9.3e-179 630.9 579 62.0
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 3.5e-178 629.0 576 59.9
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 1.0e-177 627.5 572 59.6
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 1.8e-177 626.7 577 59.6
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.3e-177 626.3 563 62.7
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 2.3e-177 626.3 569 62.2
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 1.1e-176 624.0 569 60.5
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.5e-176 623.6 579 61.5
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 1.9e-176 623.2 573 60.0
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 3.3e-176 622.5 562 61.9
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 5.6e-176 621.7 562 61.2
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 7.4e-176 621.3 564 62.1
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.1e-175 617.8 579 61.0
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 1.1e-174 617.5 573 59.7
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.8e-174 616.7 570 60.5
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 2.4e-174 616.3 571 59.9
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 4.0e-174 615.5 562 61.6
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 9.0e-174 614.4 562 61.6
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 5.8e-173 611.7 578 59.9
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 1.3e-172 610.5 565 60.4
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.3e-172 610.5 564 59.4
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 4.9e-172 608.6 565 61.2
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 4.9e-172 608.6 572 59.6
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.9e-171 606.7 563 60.6
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 3.2e-171 605.9 561 58.8
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 7.1e-171 604.7 563 58.4
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 2.7e-170 602.8 571 59.5
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 3.5e-170 602.4 575 59.0
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 4.6e-170 602.1 571 59.2
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 1.8e-169 600.1 569 59.2
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 9.6e-168 594.3 564 60.1
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 1.3e-167 594.0 571 58.5
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 1.6e-167 593.6 564 60.1
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 2.8e-167 592.8 572 58.9
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 8.1e-167 591.3 563 59.1
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 1.1e-166 590.9 664 52.0
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 2.4e-166 589.7 572 58.9
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 3.1e-166 589.3 560 57.1
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.5e-165 587.0 564 56.4
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 2.0e-165 586.6 566 57.6
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 4.9e-164 582.0 576 56.4
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 4.6e-162 575.5 566 57.2
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 6.0e-162 575.1 560 57.0
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 6.0e-162 575.1 568 56.5
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 6.7e-161 571.6 571 56.7
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.8e-158 563.5 572 55.4
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 4.1e-158 562.4 588 54.3
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 1.2e-157 560.8 557 55.3
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 1.5e-157 560.5 570 55.1
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 2.0e-157 560.1 565 57.0
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 4.5e-157 558.9 575 54.6
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 1.0e-156 557.8 562 55.0
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.0e-156 557.8 563 56.1
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 6.5e-156 555.1 569 55.0
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 1.4e-155 553.9 560 56.6
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 7.2e-155 551.6 579 54.2
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 9.3e-155 551.2 565 54.7
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 9.3e-155 551.2 556 53.8
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 2.3e-153 546.6 581 53.9
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 4.8e-151 538.9 568 53.9
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 6.3e-151 538.5 568 53.9
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 5.3e-150 535.4 567 54.0
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 6.9e-150 535.0 572 53.5
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 6.9e-150 535.0 570 55.3
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 9.1e-150 534.6 561 52.9
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.9e-148 529.6 571 53.2
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 2.1e-146 523.5 572 52.8
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 1.4e-137 494.2 425 65.2
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 3.3e-136 489.6 591 50.3
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 4.4e-136 489.2 580 50.7
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.0e-133 480.3 426 60.8
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 3.5e-133 479.6 557 49.0
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 2.2e-132 476.9 561 51.5
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.5e-132 474.9 499 56.5
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 6.7e-129 465.3 449 57.2
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.1e-126 458.0 528 52.8
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 7.7e-125 451.8 576 48.1
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 6.1e-122 442.2 567 46.4
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 8.8e-121 438.3 564 47.3
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.2e-117 427.9 375 61.6
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 7.5e-112 408.7 561 43.3
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.4e-110 404.4 298 70.1
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 1.3e-108 397.9 562 43.4
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 5.2e-105 386.0 281 72.2
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 7.0e-102 375.6 567 42.3
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 3.6e-98 363.2 569 40.9
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 2.3e-97 360.5 393 52.7
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 5.8e-88 329.3 466 46.6
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 2.1e-82 310.8 507 42.2
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.6e-77 294.7 309 55.3
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 4.3e-75 286.6 355 49.3
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 1.8e-73 281.2 540 39.1
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.3e-65 253.1 238 60.1
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 3.2e-62 243.8 492 38.2
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-61 241.5 190 69.5
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.4e-56 223.8 175 65.1
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 7.6e-56 222.6 157 72.6
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 2.2e-55 221.1 406 36.9
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-43 181.4 329 40.7
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 5.7e-43 179.9 138 71.7
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.5e-40 170.2 140 66.4
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 6.5e-39 166.4 118 76.3
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 4.2e-38 163.7 139 66.9
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 7.2e-38 162.9 118 74.6
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.5e-32 145.2 143 53.1
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 4.4e-27 127.1 292 34.2
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-22 110.9 174 37.9
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 4.7e-21 107.1 105 55.2
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 9.7e-19 99.4 86 64.0
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 9.7e-19 99.4 90 63.3
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 2.2e-18 98.2 87 56.3
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.2e-16 92.4 104 48.1
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 9.4e-14 82.8 152 37.5
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 1.4e-12 79.0 99 46.5
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 5.7e-11 73.6 168 32.7
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-09 69.3 42 76.2
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-09 68.9 171 33.9
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-08 65.5 48 68.8
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 3.5e-08 64.3 158 31.0
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 7.7e-08 63.2 196 34.2
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 9.4e-06 56.2 53 60.4


User provided reference genes

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