Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 1.1e-69 266.5 135 100.0
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 5.1e-43 177.9 110 84.5
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.1e-37 158.3 119 73.1
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 2.5e-26 122.5 122 61.5
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.2e-20 103.6 121 49.6
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 2.1e-20 102.8 123 49.6
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.1e-20 102.8 118 51.7
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 3.0e-19 99.0 124 48.4
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.9e-19 98.6 121 47.1
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 8.7e-19 97.4 118 50.0
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 8.7e-19 97.4 110 54.5
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.5e-18 95.9 65 73.8
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 4.3e-18 95.1 123 48.8
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 4.3e-18 95.1 121 47.1
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 5.6e-18 94.7 120 48.3
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 5.6e-18 94.7 112 48.2
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 5.6e-18 94.7 61 75.4
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 5.6e-18 94.7 98 54.1
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 5.6e-18 94.7 98 54.1
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 7.4e-18 94.4 126 50.8
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 1.6e-17 93.2 119 47.9
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 3.6e-17 92.0 122 48.4
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 4.8e-17 91.7 118 47.5
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.8e-17 91.7 116 49.1
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 8.1e-17 90.9 115 44.3
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 2.4e-16 89.4 123 45.5
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 3.1e-16 89.0 122 44.3
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 4.0e-16 88.6 57 70.2
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 4.0e-16 88.6 119 45.4
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 6.9e-16 87.8 131 45.8
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 6.9e-16 87.8 67 64.2
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 6.9e-16 87.8 114 47.4
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 1.2e-15 87.0 113 42.5
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.5e-15 86.7 115 44.3
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.6e-15 85.9 69 60.9
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 3.4e-15 85.5 116 44.0
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 3.4e-15 85.5 120 42.5
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.5e-15 85.1 58 65.5
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 5.8e-15 84.7 117 44.4
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 5.8e-15 84.7 127 44.9
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 5.8e-15 84.7 127 44.9
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 5.8e-15 84.7 134 47.8
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 7.6e-15 84.3 56 66.1
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 9.9e-15 84.0 134 38.1
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 9.9e-15 84.0 111 45.9
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 1.3e-14 83.6 82 53.7
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.3e-14 83.6 121 43.8
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 1.7e-14 83.2 118 43.2
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 1.7e-14 83.2 120 49.2
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 1.7e-14 83.2 128 40.6
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 2.2e-14 82.8 122 40.2
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 2.2e-14 82.8 56 64.3
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.9e-14 82.4 56 64.3
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 3.8e-14 82.0 111 45.9
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.8e-14 82.0 127 44.1
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.8e-14 82.0 125 40.8
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 4.9e-14 81.6 122 45.9
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 4.9e-14 81.6 121 43.8
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.9e-14 81.6 110 44.5
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 6.4e-14 81.3 62 61.3
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 6.4e-14 81.3 62 61.3
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 1.1e-13 80.5 56 62.5
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.1e-13 80.5 56 62.5
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.1e-13 80.5 56 62.5
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 1.1e-13 80.5 55 70.9
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 1.1e-13 80.5 57 59.6
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 1.4e-13 80.1 59 67.8
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.4e-13 80.1 103 42.7
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.4e-13 80.1 103 42.7
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.4e-13 80.1 120 40.0
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.9e-13 79.7 73 53.4
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 1.9e-13 79.7 113 42.5
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 2.4e-13 79.3 53 66.0
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 3.2e-13 79.0 104 41.3
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 3.2e-13 79.0 57 66.7
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 4.2e-13 78.6 59 59.3
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.2e-13 78.6 64 50.0
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 5.5e-13 78.2 55 69.1
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 7.1e-13 77.8 53 66.0
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 7.1e-13 77.8 51 70.6
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 7.1e-13 77.8 100 45.0
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 9.3e-13 77.4 92 46.7
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 1.2e-12 77.0 64 51.6
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 1.2e-12 77.0 123 39.0
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 2.1e-12 76.3 59 67.8
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 2.1e-12 76.3 113 39.8
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 3.5e-12 75.5 56 66.1
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 3.5e-12 75.5 74 52.7
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 6.0e-12 74.7 103 40.8
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 6.0e-12 74.7 94 42.6
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 7.9e-12 74.3 70 55.7
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 7.9e-12 74.3 99 43.4
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 7.9e-12 74.3 56 55.4
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 7.9e-12 74.3 64 60.9
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.0e-11 73.9 55 67.3
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 1.0e-11 73.9 50 62.0
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 1.0e-11 73.9 134 37.3
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 1.0e-11 73.9 82 51.2
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 1.3e-11 73.6 62 53.2
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 2.3e-11 72.8 58 56.9
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.3e-11 72.8 58 67.2
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 2.3e-11 72.8 56 62.5
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 2.3e-11 72.8 103 41.7
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.9e-11 72.0 55 65.5
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 3.9e-11 72.0 55 65.5
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 5.1e-11 71.6 72 51.4
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 5.1e-11 71.6 59 55.9
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 5.1e-11 71.6 83 43.4
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 5.1e-11 71.6 83 43.4
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 8.7e-11 70.9 53 64.2
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.1e-10 70.5 58 60.3
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 1.5e-10 70.1 53 54.7
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 1.5e-10 70.1 97 40.2
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.9e-10 69.7 55 54.5
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 1.9e-10 69.7 70 50.0
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 1.9e-10 69.7 74 48.6
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 1.9e-10 69.7 74 48.6
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 1.9e-10 69.7 49 57.1
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 2.5e-10 69.3 78 46.2
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 2.5e-10 69.3 53 58.5
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 2.5e-10 69.3 114 36.8
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 4.3e-10 68.6 74 48.6
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 4.3e-10 68.6 50 60.0
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 5.6e-10 68.2 112 42.0
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 9.6e-10 67.4 50 58.0
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 9.6e-10 67.4 50 58.0
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 9.6e-10 67.4 50 58.0
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 9.6e-10 67.4 50 58.0
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 9.6e-10 67.4 87 47.1
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 1.3e-09 67.0 50 58.0
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.3e-09 67.0 69 52.2
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.3e-09 67.0 67 50.7
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 1.6e-09 66.6 49 59.2
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 2.1e-09 66.2 111 38.7
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.1e-09 66.2 110 43.6
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 3.7e-09 65.5 53 54.7
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 3.7e-09 65.5 53 54.7
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 3.7e-09 65.5 53 54.7
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.7e-09 65.5 62 54.8
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 6.2e-09 64.7 78 44.9
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 6.2e-09 64.7 47 61.7
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 6.2e-09 64.7 50 64.0
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 1.4e-08 63.5 53 56.6
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 1.4e-08 63.5 53 52.8
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 1.4e-08 63.5 75 44.0
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.8e-08 63.2 47 59.6
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 1.8e-08 63.2 56 48.2
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 1.8e-08 63.2 53 52.8
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 1.8e-08 63.2 53 52.8
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 1.8e-08 63.2 87 43.7
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 2.4e-08 62.8 96 37.5
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 3.1e-08 62.4 52 51.9
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 3.1e-08 62.4 52 51.9
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 4.0e-08 62.0 115 38.3
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 4.0e-08 62.0 133 34.6
GSVIVG01033314001 Vitis vinifera HOM05D003595 ORTHO05D004132 4.0e-08 62.0 40 72.5
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 5.3e-08 61.6 102 35.3
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 5.3e-08 61.6 78 43.6
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 5.3e-08 61.6 102 35.3
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 5.3e-08 61.6 102 35.3
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 9.0e-08 60.8 45 62.2
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 9.0e-08 60.8 107 37.4
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-07 60.5 50 56.0
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 1.2e-07 60.5 50 56.0
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 2.0e-07 59.7 48 54.2
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 3.4e-07 58.9 102 34.3
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 3.4e-07 58.9 77 40.3
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 4.5e-07 58.5 48 52.1
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 5.8e-07 58.2 50 50.0
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 5.8e-07 58.2 57 56.1
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 7.6e-07 57.8 68 41.2
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 7.6e-07 57.8 68 41.2
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 1.0e-06 57.4 101 38.6
MSTRG.24037 Avicennia marina HOM05D002383 ORTHO05D002515 1.3e-06 57.0 62 50.0
MSTRG.3147 Avicennia marina HOM05D002383 ORTHO05D002515 2.2e-06 56.2 63 46.0
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 2.9e-06 55.8 102 33.3
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 2.9e-06 55.8 102 33.3
Glyma.01G026600 Glycine max HOM05D002383 ORTHO05D002515 4.9e-06 55.1 66 43.9
unitig_8.g2994 Utricularia gibba HOM05D003595 ORTHO05D004132 4.9e-06 55.1 65 44.6
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 6.5e-06 54.7 92 39.1
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 8.4e-06 54.3 65 43.1
SEGI_11683 Sequoiadendron giganteum HOM05D011262 ORTHO05D012767 8.4e-06 54.3 63 41.3
SEGI_13071 Sequoiadendron giganteum HOM05D002383 ORTHO05D002515 8.4e-06 54.3 76 43.4


User provided reference genes

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