Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 4.1e-102 374.8 194 100.0
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.2e-26 124.0 69 92.8
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 3.4e-24 115.9 65 90.8
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 9.9e-24 114.4 65 89.2
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 1.3e-23 114.0 70 82.9
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.7e-23 113.6 68 85.3
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 1.7e-23 113.6 68 85.3
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.7e-23 113.6 91 67.0
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.7e-23 113.6 73 78.1
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 2.2e-23 113.2 70 84.3
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 2.2e-23 113.2 151 52.3
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 2.2e-23 113.2 66 86.4
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 2.9e-23 112.8 80 75.0
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 3.8e-23 112.5 71 78.9
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 4.9e-23 112.1 85 72.9
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 6.4e-23 111.7 70 82.9
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 8.4e-23 111.3 72 80.6
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 8.4e-23 111.3 69 82.6
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.4e-22 110.5 74 78.4
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 1.4e-22 110.5 71 76.1
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 1.9e-22 110.2 65 84.6
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 2.4e-22 109.8 66 84.8
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 2.4e-22 109.8 68 82.4
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.4e-22 109.8 73 79.5
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 3.2e-22 109.4 67 82.1
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 4.1e-22 109.0 64 85.9
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 4.1e-22 109.0 64 85.9
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 4.1e-22 109.0 68 83.8
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 4.1e-22 109.0 73 78.1
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 4.1e-22 109.0 68 83.8
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 4.1e-22 109.0 59 89.8
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 4.1e-22 109.0 70 78.6
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 5.4e-22 108.6 66 81.8
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 5.4e-22 108.6 66 81.8
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 5.4e-22 108.6 73 78.1
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 5.4e-22 108.6 63 85.7
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 5.4e-22 108.6 73 78.1
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 7.1e-22 108.2 68 82.4
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 7.1e-22 108.2 68 83.8
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 9.2e-22 107.8 68 82.4
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.6e-21 107.1 66 83.3
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.6e-21 107.1 72 73.6
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 2.1e-21 106.7 64 84.4
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.1e-21 106.7 78 74.4
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 2.7e-21 106.3 75 76.0
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 3.5e-21 105.9 64 81.2
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 3.5e-21 105.9 69 81.2
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 4.6e-21 105.5 73 74.0
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 4.6e-21 105.5 70 77.1
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 7.8e-21 104.8 58 86.2
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 7.8e-21 104.8 73 74.0
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 7.8e-21 104.8 74 70.3
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 1.0e-20 104.4 71 74.6
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 1.0e-20 104.4 60 86.7
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 1.3e-20 104.0 64 79.7
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.3e-20 104.0 70 75.7
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 1.7e-20 103.6 64 79.7
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 1.7e-20 103.6 93 66.7
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 1.7e-20 103.6 73 74.0
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 1.7e-20 103.6 74 71.6
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 2.3e-20 103.2 66 77.3
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.3e-20 103.2 70 74.3
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.3e-20 103.2 64 81.2
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 2.3e-20 103.2 64 78.1
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 2.3e-20 103.2 70 75.7
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 3.0e-20 102.8 77 68.8
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 3.0e-20 102.8 64 78.1
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 3.9e-20 102.4 79 68.4
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 3.9e-20 102.4 63 82.5
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 5.1e-20 102.1 66 78.8
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 5.1e-20 102.1 73 74.0
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 6.6e-20 101.7 61 82.0
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.1e-19 100.9 66 77.3
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 1.5e-19 100.5 66 75.8
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 1.5e-19 100.5 68 79.4
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 1.9e-19 100.1 58 84.5
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 1.9e-19 100.1 70 71.4
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 2.5e-19 99.8 58 84.5
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.5e-19 99.8 58 84.5
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.5e-19 99.8 58 84.5
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 2.5e-19 99.8 72 75.0
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 4.3e-19 99.0 62 80.6
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 4.3e-19 99.0 74 71.6
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 7.3e-19 98.2 69 75.4
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 7.3e-19 98.2 65 76.9
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 9.6e-19 97.8 58 84.5
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 9.6e-19 97.8 62 80.6
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 9.6e-19 97.8 58 84.5
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 9.6e-19 97.8 62 80.6
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 9.6e-19 97.8 62 80.6
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 9.6e-19 97.8 58 84.5
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 9.6e-19 97.8 64 75.0
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 9.6e-19 97.8 64 76.6
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 9.6e-19 97.8 58 79.3
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 9.6e-19 97.8 63 76.2
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 9.6e-19 97.8 63 79.4
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 1.2e-18 97.4 63 77.8
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 1.2e-18 97.4 58 84.5
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 1.2e-18 97.4 58 84.5
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 1.6e-18 97.1 64 71.9
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.1e-18 96.7 58 82.8
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 2.8e-18 96.3 64 71.9
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 3.6e-18 95.9 65 72.3
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 3.6e-18 95.9 66 72.7
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 3.6e-18 95.9 58 81.0
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 4.7e-18 95.5 58 82.8
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 4.7e-18 95.5 63 74.6
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 4.7e-18 95.5 59 78.0
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 6.2e-18 95.1 68 70.6
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 6.2e-18 95.1 68 70.6
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 6.2e-18 95.1 68 76.5
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 6.2e-18 95.1 74 64.9
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 6.2e-18 95.1 63 76.2
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 6.2e-18 95.1 73 71.2
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 8.1e-18 94.7 68 70.6
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 8.1e-18 94.7 58 79.3
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 8.1e-18 94.7 64 75.0
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 8.1e-18 94.7 55 85.5
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 8.1e-18 94.7 68 70.6
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 1.1e-17 94.4 64 70.3
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 1.4e-17 94.0 73 67.1
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.4e-17 94.0 70 67.1
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 4.0e-17 92.4 72 66.7
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 4.0e-17 92.4 58 74.1
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 5.2e-17 92.0 58 74.1
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 5.2e-17 92.0 72 65.3
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 8.9e-17 91.3 64 71.9
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 8.9e-17 91.3 64 70.3
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.2e-16 90.9 67 65.7
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.2e-16 90.9 64 68.8
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.2e-16 90.9 69 66.7
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 1.7e-15 87.0 88 52.3
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 1.9e-14 83.6 56 69.6
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.2e-13 80.9 78 57.7
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.2e-13 80.9 78 57.7
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 1.6e-13 80.5 55 70.9
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.6e-13 80.5 66 63.6
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 2.1e-13 80.1 71 60.6
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 2.7e-13 79.7 52 82.7
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 6.0e-13 78.6 58 70.7
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 1.3e-12 77.4 56 71.4
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.3e-12 77.4 56 71.4
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 1.3e-12 77.4 58 63.8
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 1.7e-12 77.0 58 63.8
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 1.7e-12 77.0 50 76.0
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 5.1e-12 75.5 65 60.0
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 8.7e-12 74.7 58 62.1
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.1e-11 74.3 46 80.4
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 1.5e-11 73.9 42 85.7
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 2.5e-11 73.2 86 47.7
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 3.3e-11 72.8 60 61.7
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 1.6e-10 70.5 64 54.7
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 2.4e-09 66.6 46 78.3
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 3.1e-09 66.2 46 71.7
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 5.8e-08 62.0 49 69.4
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 6.4e-07 58.5 67 44.8


User provided reference genes

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