Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0020700 Salix brachista HOM05D005060 ORTHO05D005975 7.7e-84 313.9 177 100.0
Potri.006G029500 Populus trichocarpa HOM05D005060 ORTHO05D005975 3.8e-46 188.7 175 65.1
Potri.006G028500 Populus trichocarpa HOM05D005060 ORTHO05D005975 3.5e-44 182.2 175 68.0
Potri.006G028101 Populus trichocarpa HOM05D005060 ORTHO05D005975 5.3e-24 115.2 95 76.8
Manes.08G066600 Manihot esculenta HOM05D005060 ORTHO05D005975 5.7e-18 95.1 109 62.4
Manes.13G072000 Manihot esculenta HOM05D005060 ORTHO05D005975 9.0e-16 87.8 109 64.2
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 7.2e-13 78.2 114 46.5
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 4.6e-12 75.5 114 50.0
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 1.0e-11 74.3 121 41.3
QL07p014517 Quercus lobata HOM05D005060 ORTHO05D005975 2.3e-11 73.2 113 45.1
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 3.0e-11 72.8 114 43.9
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 6.7e-11 71.6 114 54.4
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 8.7e-11 71.2 114 43.9
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 8.7e-11 71.2 182 39.6
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.1e-10 70.9 114 52.6
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 5.7e-10 68.6 120 50.0
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 3.7e-09 65.9 113 45.1
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 3.7e-09 65.9 161 36.6
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 4.8e-09 65.5 105 47.6
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 6.3e-09 65.1 115 47.0
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 6.3e-09 65.1 157 36.9
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 8.2e-09 64.7 182 39.6
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 1.1e-08 64.3 82 57.3
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 1.1e-08 64.3 117 43.6
CiPaw.09G163900 Carya illinoinensis HOM05D005060 ORTHO05D005975 1.4e-08 63.9 106 42.5
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.4e-08 63.9 105 48.6
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 1.4e-08 63.9 115 41.7
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 2.4e-08 63.2 115 46.1
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 2.4e-08 63.2 118 44.1
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 3.1e-08 62.8 92 40.2
Haze_20302 Corylus avellana HOM05D005060 ORTHO05D005975 4.1e-08 62.4 178 37.6
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 4.1e-08 62.4 108 48.1
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 4.1e-08 62.4 121 48.8
Atru.chr1.1518 Acer truncatum HOM05D005060 ORTHO05D005975 5.3e-08 62.0 117 53.8
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 5.3e-08 62.0 116 40.5
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 6.9e-08 61.6 112 47.3
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 6.9e-08 61.6 93 44.1
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 6.9e-08 61.6 188 36.7
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 9.0e-08 61.2 91 45.1
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 1.2e-07 60.8 94 57.4
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 1.5e-07 60.5 148 43.9
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.5e-07 60.5 99 48.5
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 4.5e-07 58.9 91 51.6
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 4.5e-07 58.9 143 36.4
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 4.5e-07 58.9 116 35.3
Cpa.g.sc33.198 Carica papaya HOM05D005060 ORTHO05D005975 5.9e-07 58.5 114 50.9
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 7.7e-07 58.2 120 41.7
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 7.7e-07 58.2 120 41.7
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 7.7e-07 58.2 120 41.7
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 1.0e-06 57.8 62 58.1
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 1.0e-06 57.8 69 52.2
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 1.7e-06 57.0 113 40.7
Ciclev10013042m.g Citrus clementina HOM05D005060 ORTHO05D005975 1.7e-06 57.0 177 44.6
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 1.7e-06 57.0 104 44.2
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.7e-06 57.0 104 44.2
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 1.7e-06 57.0 104 44.2
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 1.7e-06 57.0 95 43.2
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 2.2e-06 56.6 67 61.2
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 2.2e-06 56.6 91 49.5
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 5.0e-06 55.5 61 55.7
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 6.5e-06 55.1 114 40.4
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 8.5e-06 54.7 108 51.9


User provided reference genes

Program Settings