Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 1.0e-32 142.9 78 100.0
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.5e-20 101.3 66 75.8
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 5.0e-19 97.4 66 75.8
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 9.5e-18 93.2 67 77.6
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 9.5e-18 93.2 67 77.6
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 3.4e-15 84.7 72 69.4
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 9.8e-15 83.2 73 63.0
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 9.8e-15 83.2 73 63.0
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 8.3e-14 80.1 63 73.0
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 8.3e-14 80.1 70 64.3
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 8.3e-14 80.1 70 64.3
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 8.3e-14 80.1 73 60.3
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 1.8e-13 79.0 70 68.6
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 5.4e-13 77.4 66 69.7
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.4e-13 77.4 66 68.2
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.4e-13 77.4 66 68.2
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.0e-13 77.0 70 62.9
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 9.2e-13 76.6 66 69.7
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 1.2e-12 76.3 63 69.8
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 1.2e-12 76.3 73 63.0
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.6e-12 75.9 67 70.1
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 2.0e-12 75.5 62 71.0
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.7e-12 75.1 66 63.6
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 2.7e-12 75.1 62 66.1
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 3.5e-12 74.7 63 69.8
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.5e-12 74.7 70 61.4
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 7.8e-12 73.6 66 63.6
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 1.0e-11 73.2 71 66.2
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 1.0e-11 73.2 63 68.3
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 1.3e-11 72.8 71 64.8
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 1.7e-11 72.4 67 67.2
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.3e-11 72.0 60 68.3
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.3e-11 72.0 67 65.7
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 3.9e-11 71.2 58 67.2
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 3.9e-11 71.2 65 63.1
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 5.0e-11 70.9 72 59.7
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 6.6e-11 70.5 72 59.7
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 8.6e-11 70.1 71 63.4
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 8.6e-11 70.1 71 63.4
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 1.1e-10 69.7 69 63.8
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 1.5e-10 69.3 70 57.1
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 1.5e-10 69.3 76 59.2
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.5e-10 69.3 67 56.7
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 1.9e-10 68.9 71 63.4
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 1.9e-10 68.9 71 63.4
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.9e-10 68.9 67 61.2
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.9e-10 68.9 70 61.4
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 1.9e-10 68.9 66 63.6
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 3.3e-10 68.2 70 54.3
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 3.3e-10 68.2 57 70.2
Sabra16G0021100 Salix brachista HOM05D002385 ORTHO05D002245 3.3e-10 68.2 54 64.8
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 5.6e-10 67.4 61 65.6
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.6e-10 67.4 65 47.7
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 7.3e-10 67.0 68 61.8
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 7.3e-10 67.0 71 62.0
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 9.5e-10 66.6 68 67.6
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.2e-09 66.2 61 65.6
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 1.2e-09 66.2 61 60.7
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.6e-09 65.9 71 59.2
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 1.6e-09 65.9 67 55.2
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.1e-09 65.5 60 61.7
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.1e-09 65.5 60 61.7
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 2.1e-09 65.5 60 61.7
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 2.1e-09 65.5 62 64.5
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.1e-09 65.5 68 52.9
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 2.1e-09 65.5 66 62.1
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 2.1e-09 65.5 54 70.4
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 2.1e-09 65.5 53 75.5
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 2.8e-09 65.1 73 58.9
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 2.8e-09 65.1 73 58.9
Medtr3g081140 Medicago truncatula HOM05D002385 ORTHO05D002245 3.6e-09 64.7 70 61.4
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 3.6e-09 64.7 72 55.6
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 4.7e-09 64.3 74 55.4
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 4.7e-09 64.3 73 47.9
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 4.7e-09 64.3 61 60.7
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 4.7e-09 64.3 61 60.7
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 4.7e-09 64.3 61 65.6
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 6.2e-09 63.9 54 64.8
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 6.2e-09 63.9 73 58.9
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 6.2e-09 63.9 71 59.2
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 6.2e-09 63.9 62 64.5
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 8.0e-09 63.5 67 55.2
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 8.0e-09 63.5 67 53.7
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 8.0e-09 63.5 67 55.2
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 8.0e-09 63.5 67 55.2
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 8.0e-09 63.5 68 58.8
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 8.0e-09 63.5 72 55.6
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 1.0e-08 63.2 70 55.7
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 1.0e-08 63.2 69 59.4
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.0e-08 63.2 67 55.2
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.4e-08 62.8 63 61.9
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 1.4e-08 62.8 68 58.8
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 1.4e-08 62.8 67 59.7
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 1.8e-08 62.4 67 52.2
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 1.8e-08 62.4 78 47.4
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 1.8e-08 62.4 58 58.6
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.8e-08 62.4 73 60.3
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.8e-08 62.4 71 54.9
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 1.8e-08 62.4 70 52.9
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 2.3e-08 62.0 67 53.7
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 2.3e-08 62.0 67 53.7
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 2.3e-08 62.0 67 52.2
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.3e-08 62.0 62 61.3
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 2.3e-08 62.0 49 73.5
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 2.3e-08 62.0 47 76.6
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 2.3e-08 62.0 69 49.3
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 2.3e-08 62.0 61 63.9
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 2.3e-08 62.0 73 49.3
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.3e-08 62.0 61 59.0
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 2.3e-08 62.0 73 56.2
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 2.3e-08 62.0 68 58.8
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 3.1e-08 61.6 69 53.6
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 3.1e-08 61.6 54 64.8
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 4.0e-08 61.2 47 76.6
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 4.0e-08 61.2 47 76.6
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 4.0e-08 61.2 73 50.7
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 4.0e-08 61.2 63 50.8
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 5.2e-08 60.8 62 61.3
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 5.2e-08 60.8 57 63.2
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 5.2e-08 60.8 52 65.4
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 5.2e-08 60.8 74 51.4
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 5.2e-08 60.8 71 54.9
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 5.2e-08 60.8 71 54.9
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 5.2e-08 60.8 77 53.2
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 6.8e-08 60.5 68 61.8
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 6.8e-08 60.5 71 54.9
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 6.8e-08 60.5 65 50.8
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 8.9e-08 60.1 65 53.8
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 8.9e-08 60.1 67 58.2
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 8.9e-08 60.1 76 52.6
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 8.9e-08 60.1 66 59.1
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 8.9e-08 60.1 76 52.6
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 8.9e-08 60.1 71 54.9
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 8.9e-08 60.1 58 63.8
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 8.9e-08 60.1 60 65.0
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 8.9e-08 60.1 66 57.6
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 1.2e-07 59.7 60 56.7
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 1.2e-07 59.7 67 52.2
FAN19G0851 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.2e-07 59.7 62 62.9
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 1.2e-07 59.7 69 50.7
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 1.2e-07 59.7 70 52.9
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 1.5e-07 59.3 70 55.7
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.0e-07 58.9 66 47.0
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 2.0e-07 58.9 62 59.7
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 2.6e-07 58.5 72 48.6
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 2.6e-07 58.5 78 53.8
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 2.6e-07 58.5 67 56.7
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 2.6e-07 58.5 72 54.2
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 2.6e-07 58.5 67 50.7
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 3.4e-07 58.2 73 47.9
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 3.4e-07 58.2 72 45.8
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 4.4e-07 57.8 54 51.9
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.4e-07 57.8 71 52.1
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 4.4e-07 57.8 90 44.4
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 4.4e-07 57.8 66 57.6
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 5.8e-07 57.4 58 55.2
Prupe.6G185100 Prunus persica HOM05D002385 ORTHO05D002245 5.8e-07 57.4 65 61.5
Prupe.6G185300 Prunus persica HOM05D002385 ORTHO05D002245 5.8e-07 57.4 65 61.5
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 7.5e-07 57.0 69 46.4
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 7.5e-07 57.0 72 43.1
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 7.5e-07 57.0 62 53.2
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 7.5e-07 57.0 67 50.7
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 7.5e-07 57.0 72 45.8
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 7.5e-07 57.0 81 42.0
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 7.5e-07 57.0 67 50.7
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 9.8e-07 56.6 73 47.9
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 9.8e-07 56.6 62 53.2
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.3e-06 56.2 71 49.3
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 1.3e-06 56.2 55 60.0
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 1.3e-06 56.2 33 69.7
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 1.3e-06 56.2 69 49.3
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 1.3e-06 56.2 48 70.8
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 1.7e-06 55.8 73 46.6
Sabra16G0021300 Salix brachista HOM05D002385 ORTHO05D002245 1.7e-06 55.8 53 58.5
arahy.Tifrunner.gnm1.ann1.7QB2HQ Arachis hypogaea HOM05D002385 ORTHO05D002245 2.2e-06 55.5 68 54.4
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 2.9e-06 55.1 73 45.2
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 2.9e-06 55.1 67 53.7
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 3.7e-06 54.7 64 48.4
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 3.7e-06 54.7 69 46.4
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 3.7e-06 54.7 69 46.4
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 3.7e-06 54.7 74 45.9
Psat1g003480 Pisum sativum HOM05D002385 ORTHO05D002245 3.7e-06 54.7 62 51.6
Psat1g003560 Pisum sativum HOM05D002385 ORTHO05D002245 3.7e-06 54.7 70 47.1
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 4.9e-06 54.3 68 51.5
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 6.4e-06 53.9 73 47.9
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 6.4e-06 53.9 68 55.9


User provided reference genes

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