Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 1.5e-71 272.7 138 100.0
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 4.2e-61 238.0 138 88.4
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.3e-46 189.9 140 79.3
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 3.8e-46 188.3 138 76.8
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.5e-21 106.7 138 45.7
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 4.3e-21 105.1 139 51.8
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 5.6e-21 104.8 139 44.6
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 1.2e-20 103.6 140 46.4
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 8.0e-20 100.9 138 45.7
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.4e-19 100.1 155 47.7
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 1.8e-19 99.8 140 42.1
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 3.1e-19 99.0 143 41.3
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 4.0e-19 98.6 139 46.0
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 8.9e-19 97.4 138 47.8
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 1.5e-18 96.7 147 50.3
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 1.5e-18 96.7 140 45.7
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 3.4e-18 95.5 139 46.8
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 9.8e-18 94.0 143 46.2
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 1.3e-17 93.6 145 46.2
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 4.9e-17 91.7 144 45.1
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 6.4e-17 91.3 148 43.2
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 1.4e-16 90.1 142 45.1
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 1.4e-16 90.1 162 45.1
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 1.9e-16 89.7 144 47.2
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.4e-16 89.4 138 43.5
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 7.0e-16 87.8 135 40.7
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 2.7e-15 85.9 142 43.7
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.7e-15 85.9 141 41.8
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 4.6e-15 85.1 147 42.2
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 7.8e-15 84.3 148 44.6
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 2.3e-14 82.8 138 43.5
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 3.0e-14 82.4 140 43.6
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 3.9e-14 82.0 151 42.4
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 8.6e-14 80.9 138 42.8
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 8.6e-14 80.9 138 42.8
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.5e-13 80.1 140 45.0
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 5.6e-13 78.2 150 40.0
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 9.5e-13 77.4 136 43.4
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 1.2e-12 77.0 158 40.5
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.6e-12 76.6 154 40.3
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.6e-12 76.6 160 45.6
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.1e-12 76.3 140 42.9
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 2.1e-12 76.3 138 41.3
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.8e-12 75.9 160 43.8
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 2.8e-12 75.9 90 50.0
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 3.6e-12 75.5 143 40.6
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 3.6e-12 75.5 139 38.1
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.7e-12 75.1 158 44.3
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 4.7e-12 75.1 144 38.9
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 6.2e-12 74.7 147 45.6
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 6.2e-12 74.7 138 41.3
Atru.chr1.2342 Acer truncatum HOM05D004793 ORTHO05D004423 8.1e-12 74.3 175 40.6
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 1.1e-11 73.9 145 40.7
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 1.4e-11 73.6 141 40.4
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 1.8e-11 73.2 141 39.7
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 2.3e-11 72.8 141 40.4
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 3.1e-11 72.4 143 37.8
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.1e-11 72.4 138 37.7
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 4.0e-11 72.0 137 36.5
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 4.0e-11 72.0 137 36.5
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 5.2e-11 71.6 137 38.7
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 6.8e-11 71.2 145 40.0
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 8.9e-11 70.9 139 39.6
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 8.9e-11 70.9 138 38.4
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.2e-10 70.5 138 39.9
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 1.5e-10 70.1 143 35.7
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 1.5e-10 70.1 147 37.4
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 1.5e-10 70.1 157 36.3
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.0e-10 69.7 138 37.7
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 2.0e-10 69.7 138 37.0
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 3.4e-10 68.9 141 39.7
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.4e-10 68.9 138 39.1
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 3.4e-10 68.9 138 39.1
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 3.4e-10 68.9 144 38.9
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.4e-10 68.6 138 37.7
FvH4_3g00610 Fragaria vesca HOM05D020126 ORTHO05D004423 5.8e-10 68.2 165 38.2
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 7.5e-10 67.8 171 36.8
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.5e-10 67.8 138 37.7
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 9.8e-10 67.4 157 39.5
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 9.8e-10 67.4 138 38.4
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 9.8e-10 67.4 138 38.4
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 9.8e-10 67.4 138 37.7
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 9.8e-10 67.4 138 38.4
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 9.8e-10 67.4 138 38.4
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 1.3e-09 67.0 157 36.9
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.3e-09 67.0 127 43.3
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.3e-09 67.0 137 35.8
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 1.7e-09 66.6 138 38.4
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 2.2e-09 66.2 140 38.6
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 2.9e-09 65.9 138 37.0
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 2.9e-09 65.9 156 35.9
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 3.7e-09 65.5 139 36.7
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 3.7e-09 65.5 139 36.7
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 3.7e-09 65.5 143 38.5
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 3.7e-09 65.5 151 38.4
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 4.9e-09 65.1 157 35.7
AL7G38540 Arabidopsis lyrata HOM05D010379 ORTHO05D012419 6.4e-09 64.7 139 37.4
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 8.3e-09 64.3 133 35.3
CARHR222830 Cardamine hirsuta HOM05D010379 ORTHO05D012419 1.1e-08 63.9 139 38.8
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 1.1e-08 63.9 145 39.3
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.1e-08 63.9 109 34.9
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 1.4e-08 63.5 159 35.8
FAN21G1828 Fragaria x ananassa HOM05D020126 ORTHO05D004423 1.9e-08 63.2 165 36.4
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 1.9e-08 63.2 139 35.3
Sc05g0009740 Simmondsia chinensis HOM05D004793 ORTHO05D004423 4.1e-08 62.0 186 36.0
Carub.0007s2506 Capsella rubella HOM05D010379 ORTHO05D012419 5.4e-08 61.6 139 37.4
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 7.1e-08 61.2 143 33.6
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 7.1e-08 61.2 140 36.4
RcHm_v2.0_Chr5g0000821 Rosa chinensis HOM05D020126 ORTHO05D004423 7.1e-08 61.2 160 35.6
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 1.2e-07 60.5 152 36.8
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 1.2e-07 60.5 137 38.7
Sed0024469 Sechium edule HOM05D004793 ORTHO05D004423 1.2e-07 60.5 141 36.2
A03p49840 Brassica napus HOM05D010379 ORTHO05D012419 1.6e-07 60.1 139 39.6
BraA03t14079Z Brassica rapa HOM05D010379 ORTHO05D012419 1.6e-07 60.1 139 39.6
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 1.6e-07 60.1 143 35.7
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.1e-07 59.7 128 38.3
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.1e-07 59.7 128 38.3
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.7e-07 59.3 143 37.8
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 2.7e-07 59.3 138 39.1
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 6.0e-07 58.2 141 34.8
C07p47900 Brassica napus HOM05D010379 ORTHO05D012419 7.8e-07 57.8 139 38.1
BolC7t45312H Brassica oleracea HOM05D010379 ORTHO05D012419 7.8e-07 57.8 139 38.1
PGSC0003DMG400008468 Solanum tuberosum HOM05D018828 ORTHO05D004423 7.8e-07 57.8 138 34.1
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 1.3e-06 57.0 128 35.2
CAN.G696.14 Capsicum annuum HOM05D018828 ORTHO05D004423 1.3e-06 57.0 138 37.7
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 1.7e-06 56.6 156 35.3
HPP92_014035 Vanilla planifolia HOM05D004793 ORTHO05D004423 1.7e-06 56.6 139 37.4
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 2.3e-06 56.2 142 35.9
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.3e-06 56.2 140 36.4
AT4G16447 Arabidopsis thaliana HOM05D010379 ORTHO05D012419 3.0e-06 55.8 139 35.3
Sp7g15000 Schrenkiella parvula HOM05D010379 ORTHO05D012419 3.0e-06 55.8 139 36.0
Migut.M00035 Erythranthe guttata HOM05D004793 ORTHO05D004423 3.9e-06 55.5 140 36.4
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 3.9e-06 55.5 134 38.1
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 5.1e-06 55.1 101 37.6
SGA_v2.0_scaffold7G03722 Striga asiatica HOM05D026462 ORTHO05D004423 5.1e-06 55.1 138 32.6


User provided reference genes

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