Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 0.0e+00 1145.6 585 100.0
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 3.7e-284 981.1 534 93.8
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 2.4e-259 898.7 532 86.5
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 4.9e-252 874.4 526 84.2
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 6.4e-252 874.0 529 82.4
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 5.4e-251 870.9 534 82.0
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.2e-250 869.8 529 81.9
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 1.9e-248 862.4 530 81.7
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 2.5e-248 862.1 542 80.6
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 3.3e-248 861.7 532 82.5
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 5.6e-248 860.9 535 82.1
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 6.4e-244 847.4 537 80.4
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 2.4e-243 845.5 523 80.9
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 3.2e-243 845.1 530 79.6
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 7.1e-243 844.0 533 79.9
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 1.0e-241 840.1 530 81.3
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 5.6e-240 834.3 523 79.5
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.3e-239 833.2 530 77.7
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 9.9e-237 823.5 529 79.6
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.3e-236 823.2 523 78.4
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 1.7e-236 822.8 525 78.7
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 6.4e-236 820.8 527 78.0
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 1.9e-235 819.3 531 78.5
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.0e-233 813.5 525 78.5
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.3e-233 812.4 529 78.4
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.1e-230 802.0 463 85.5
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 2.6e-229 798.9 528 77.3
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 4.5e-229 798.1 542 75.6
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.0e-228 797.0 536 75.4
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.3e-228 796.6 462 85.1
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 3.8e-228 795.0 525 77.9
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.9e-228 794.7 519 77.6
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 4.9e-228 794.7 524 77.7
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.9e-227 792.7 535 74.4
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 3.2e-227 792.0 515 77.9
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 3.2e-227 792.0 533 74.9
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 4.2e-227 791.6 513 76.8
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 5.5e-227 791.2 536 75.9
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 5.5e-227 791.2 536 75.9
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 5.5e-227 791.2 536 75.9
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 7.1e-227 790.8 543 74.0
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 7.1e-227 790.8 535 74.2
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 1.6e-226 789.6 526 75.7
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 2.1e-226 789.3 536 76.1
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 2.1e-226 789.3 534 74.5
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 2.7e-226 788.9 543 73.8
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 3.5e-226 788.5 525 77.9
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 4.6e-226 788.1 543 73.7
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 4.6e-226 788.1 514 78.0
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 6.0e-226 787.7 533 74.7
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 6.7e-225 784.3 540 74.1
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 8.7e-225 783.9 523 74.0
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 8.7e-225 783.9 523 74.2
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 5.7e-224 781.2 533 73.7
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 5.7e-224 781.2 533 73.2
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 7.4e-224 780.8 541 74.3
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 7.4e-224 780.8 535 74.8
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 9.7e-224 780.4 542 74.2
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 2.8e-223 778.9 543 74.4
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 2.8e-223 778.9 534 73.4
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 3.7e-223 778.5 536 75.4
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 4.8e-223 778.1 545 73.8
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 6.3e-223 777.7 532 74.2
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 8.2e-223 777.3 536 75.0
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 9.0e-222 773.9 540 74.1
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.0e-221 772.7 516 74.4
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 5.9e-221 771.2 542 73.4
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.0e-220 770.4 522 74.9
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.3e-220 770.0 527 74.4
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.7e-220 769.6 534 72.8
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 3.8e-220 768.5 519 76.3
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.9e-219 766.1 541 72.6
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.9e-219 766.1 541 72.6
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.9e-219 766.1 541 72.6
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 3.2e-219 765.4 567 70.0
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.2e-218 763.5 540 72.6
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 7.9e-218 760.8 520 74.6
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 1.0e-217 760.4 476 80.3
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.8e-217 759.6 540 72.2
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 2.3e-217 759.2 525 75.2
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.3e-217 759.2 531 73.3
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 6.7e-217 757.7 510 74.3
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 1.9e-216 756.1 534 70.0
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.7e-215 753.1 436 85.8
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 3.1e-214 748.8 530 70.2
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 5.3e-214 748.0 530 69.8
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 6.9e-214 747.7 537 72.8
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 1.5e-213 746.5 514 74.1
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 1.0e-212 743.8 482 78.0
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 5.0e-212 741.5 514 74.5
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 5.0e-212 741.5 531 69.1
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.4e-211 740.0 482 77.4
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 2.5e-211 739.2 523 73.2
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 4.2e-211 738.4 532 69.5
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.0e-209 733.8 527 71.9
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 5.1e-209 731.5 531 68.2
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 3.3e-208 728.8 520 68.7
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 3.3e-208 728.8 536 68.7
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.7e-207 726.5 538 68.0
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 6.3e-207 724.5 538 68.0
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 8.2e-207 724.2 520 70.0
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 4.1e-206 721.8 520 69.6
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 4.1e-206 721.8 533 68.7
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 7.7e-205 717.6 538 67.3
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 2.3e-201 706.1 533 69.6
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 6.7e-201 704.5 452 79.4
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.2e-197 693.7 460 73.0
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 3.8e-196 688.7 456 74.1
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 8.2e-191 671.0 533 63.4
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 3.2e-187 659.1 526 64.1
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 3.7e-183 645.6 529 60.7
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 4.1e-182 642.1 428 75.9
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.2e-181 640.6 391 80.6
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.2e-178 630.6 528 60.0
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.6e-178 630.2 542 59.4
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 4.0e-177 625.5 388 79.9
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-174 617.5 548 58.9
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 4.1e-174 615.5 386 79.3
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.9e-171 606.7 533 60.4
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.0e-169 600.9 460 64.3
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.4e-161 573.9 391 71.4
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.1e-157 560.1 380 71.6
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 4.7e-154 548.9 361 75.9
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.0e-148 531.2 317 82.6
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.0e-140 504.6 342 74.0
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 4.0e-137 492.7 321 74.5
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 2.4e-129 466.8 470 49.8
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 4.5e-128 462.6 537 45.4
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 5.6e-123 445.7 455 49.0
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 3.3e-115 419.9 560 41.4
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 2.5e-107 393.7 226 86.7
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 7.4e-107 392.1 543 39.0
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 3.9e-92 343.2 257 71.6
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 3.8e-79 300.1 194 75.3
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 6.8e-68 262.7 198 69.7
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 7.5e-67 259.2 180 72.8
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 1.0e-63 248.8 151 82.1
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 1.7e-58 231.5 171 66.7
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 7.8e-48 196.1 159 60.4
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 3.0e-47 194.1 159 65.4
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.6e-45 188.3 136 72.1
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 4.0e-44 183.7 149 65.1
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 7.3e-38 162.9 148 61.5
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 5.2e-36 156.8 97 79.4
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 3.2e-33 147.5 149 55.7
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.8e-26 124.0 110 59.1
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 2.1e-21 108.2 71 73.2
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.4e-19 100.9 498 24.5
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 5.8e-19 100.1 461 25.2
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 7.6e-19 99.8 74 71.6
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 8.1e-13 79.7 67 56.7
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 8.1e-13 79.7 67 56.7
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 4.9e-10 70.5 46 69.6
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.0e-07 62.8 72 44.4
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 1.0e-07 62.8 50 54.0
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 8.7e-07 59.7 54 53.7


User provided reference genes

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