Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 3.4e-266 921.0 439 100.0
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 5.4e-211 737.6 417 85.9
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 1.1e-190 670.2 418 77.5
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 4.4e-189 664.8 418 76.3
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 2.9e-188 662.1 417 74.3
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.9e-187 659.4 418 76.1
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 2.4e-187 659.1 420 76.4
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 6.0e-186 654.4 417 75.3
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.7e-185 652.9 415 75.7
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 3.9e-185 651.7 417 74.6
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.9e-184 649.4 417 74.8
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 1.2e-183 646.7 417 74.8
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 1.6e-183 646.4 417 74.1
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 1.6e-183 646.4 417 74.6
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 2.1e-183 646.0 417 74.6
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 2.8e-183 645.6 418 73.9
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 2.8e-183 645.6 419 74.0
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 2.8e-183 645.6 417 74.1
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 6.2e-183 644.4 418 74.2
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 1.1e-182 643.7 418 74.9
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 2.4e-182 642.5 417 73.4
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 3.1e-182 642.1 417 73.6
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 3.1e-182 642.1 418 74.2
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 2.6e-181 639.0 417 73.4
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 2.6e-181 639.0 444 70.3
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 2.6e-181 639.0 444 70.3
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 3.4e-181 638.6 415 73.7
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 3.4e-181 638.6 417 72.7
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 7.6e-181 637.5 420 73.6
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 1.7e-180 636.3 418 72.2
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 2.9e-180 635.6 416 73.8
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.8e-180 635.2 417 73.6
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 4.9e-180 634.8 415 73.7
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 1.1e-179 633.6 420 73.3
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 1.4e-179 633.3 417 73.4
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 3.2e-179 632.1 419 72.3
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 3.2e-179 632.1 417 71.7
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 3.2e-179 632.1 417 72.9
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 5.4e-179 631.3 415 71.8
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 7.1e-179 630.9 418 73.0
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 9.3e-179 630.6 415 71.8
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 9.3e-179 630.6 417 72.4
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 2.7e-178 629.0 415 72.5
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 3.5e-178 628.6 417 72.2
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 3.5e-178 628.6 453 68.7
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 6.0e-178 627.9 415 71.1
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 6.0e-178 627.9 415 72.8
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 7.8e-178 627.5 396 75.5
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 1.0e-177 627.1 454 66.7
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 1.3e-177 626.7 412 72.3
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 1.3e-177 626.7 415 72.3
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 1.7e-177 626.3 415 71.8
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 1.7e-177 626.3 415 71.1
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.7e-177 626.3 417 71.9
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.9e-177 625.2 417 72.2
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 5.1e-177 624.8 417 71.7
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 6.6e-177 624.4 415 70.6
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 6.6e-177 624.4 415 70.4
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 8.7e-177 624.0 417 72.2
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 1.1e-176 623.6 415 70.4
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 1.1e-176 623.6 415 70.4
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 1.5e-176 623.2 417 71.5
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.5e-176 623.2 417 71.7
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 1.9e-176 622.9 422 72.3
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.5e-176 622.5 417 71.7
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 3.3e-176 622.1 417 70.0
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 4.3e-176 621.7 415 70.6
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 9.6e-176 620.5 418 71.3
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 1.3e-175 620.2 418 72.0
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.6e-175 619.8 417 71.5
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 6.2e-175 617.8 418 71.3
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 8.1e-175 617.5 421 72.2
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 3.1e-174 615.5 415 68.9
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 3.1e-174 615.5 455 67.5
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 5.3e-174 614.8 416 72.1
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 1.2e-173 613.6 418 69.1
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 1.5e-173 613.2 451 67.4
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 5.8e-173 611.3 418 68.9
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 9.9e-173 610.5 415 68.9
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 2.2e-172 609.4 415 69.4
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 3.8e-172 608.6 415 68.7
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 1.1e-171 607.1 415 68.2
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 3.2e-171 605.5 499 60.9
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 4.2e-171 605.1 415 68.4
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 1.2e-170 603.6 416 68.8
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 2.1e-170 602.8 418 69.1
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 6.0e-170 601.3 415 68.9
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 1.0e-169 600.5 416 67.8
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 2.3e-169 599.4 415 66.7
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 4.3e-168 595.1 415 67.5
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 7.4e-168 594.3 419 68.5
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 3.7e-167 592.0 425 67.1
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 3.7e-167 592.0 416 68.8
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 3.7e-167 592.0 419 68.5
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 1.8e-166 589.7 419 67.8
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 2.4e-166 589.3 419 68.5
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 6.9e-166 587.8 419 68.0
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 1.5e-165 586.6 454 63.2
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 4.5e-165 585.1 420 68.1
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 2.2e-164 582.8 422 65.4
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 2.9e-164 582.4 416 68.5
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 3.2e-163 578.9 419 63.7
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 4.2e-163 578.6 429 67.4
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 4.2e-163 578.6 423 65.5
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 1.2e-162 577.0 423 68.1
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 3.0e-161 572.4 417 64.0
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 2.5e-160 569.3 431 65.9
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 3.4e-157 558.9 455 62.2
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 5.8e-157 558.1 387 70.3
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 4.6e-146 521.9 396 65.9
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 4.6e-146 521.9 299 80.6
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 3.1e-142 509.2 348 71.3
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 3.4e-141 505.8 375 62.9
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 3.7e-135 485.7 417 57.3
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 1.8e-134 483.4 418 60.3
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.4e-134 483.0 421 61.0
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 7.0e-134 481.5 413 57.1
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 2.0e-133 479.9 417 57.8
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 1.7e-132 476.9 414 56.8
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 2.1e-122 443.4 377 57.8
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 3.2e-115 419.5 418 49.5
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 8.8e-113 411.4 330 62.7
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 1.3e-103 380.9 474 44.9
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 1.4e-102 377.5 415 48.7
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 3.9e-100 369.4 465 48.0
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 1.2e-98 364.4 465 47.7
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 1.1e-89 334.7 419 44.6
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.0e-39 168.7 98 77.6
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.2e-22 110.5 98 57.1
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 5.5e-22 109.8 85 63.5
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 5.1e-20 103.2 66 66.7
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 5.1e-20 103.2 66 66.7
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.5e-19 101.7 55 83.6
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 4.4e-19 100.1 67 65.7
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 7.4e-19 99.4 65 64.6
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 1.3e-18 98.6 66 66.7
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 1.7e-18 98.2 153 40.5
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 6.3e-18 96.3 67 64.2
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 7.7e-16 89.4 66 59.1
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.1e-09 67.0 70 47.1
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 1.1e-06 58.9 36 69.4
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 1.9e-06 58.2 303 24.8
CAN.G327.2 Capsicum annuum HOM05D001287 ORTHO05D010951 3.2e-06 57.4 25 96.0


User provided reference genes

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