Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 7.3e-70 268.9 455 100.0
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 2.9e-58 230.3 455 94.7
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 2.1e-24 117.9 107 51.4
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 6.7e-23 112.8 71 78.9
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 5.7e-22 109.8 71 73.2
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 1.3e-21 108.6 69 78.3
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 1.7e-21 108.2 71 73.2
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 6.3e-21 106.3 77 63.6
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 6.3e-21 106.3 71 70.4
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 8.2e-21 105.9 102 50.0
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 8.2e-21 105.9 69 71.0
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 1.4e-20 105.1 105 49.5
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 2.4e-20 104.4 78 61.5
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 3.1e-20 104.0 75 66.7
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 4.1e-20 103.6 103 51.5
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 5.3e-20 103.2 71 66.2
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 5.3e-20 103.2 67 70.1
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 7.0e-20 102.8 103 48.5
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 7.0e-20 102.8 68 72.1
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 9.1e-20 102.4 71 64.8
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 9.1e-20 102.4 101 50.5
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 1.2e-19 102.1 77 64.9
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 1.2e-19 102.1 78 65.4
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 1.6e-19 101.7 67 73.1
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 1.6e-19 101.7 67 73.1
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 2.6e-19 100.9 65 72.3
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 4.5e-19 100.1 69 63.8
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 4.5e-19 100.1 80 58.8
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 7.7e-19 99.4 107 48.6
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 7.7e-19 99.4 69 66.7
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 7.7e-19 99.4 66 68.2
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 7.7e-19 99.4 66 68.2
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 1.0e-18 99.0 77 58.4
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 1.0e-18 99.0 74 66.2
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 1.0e-18 99.0 80 55.0
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 1.3e-18 98.6 78 62.8
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 1.3e-18 98.6 71 67.6
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 1.7e-18 98.2 71 66.2
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 1.7e-18 98.2 74 63.5
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 2.2e-18 97.8 109 43.1
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 2.2e-18 97.8 71 67.6
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 2.9e-18 97.4 66 68.2
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 3.8e-18 97.1 108 43.5
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.8e-18 97.1 71 67.6
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.8e-18 97.1 71 67.6
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 3.8e-18 97.1 65 66.2
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 5.0e-18 96.7 77 59.7
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 5.0e-18 96.7 67 64.2
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 6.5e-18 96.3 68 63.2
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 6.5e-18 96.3 68 63.2
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 6.5e-18 96.3 108 42.6
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 8.5e-18 95.9 77 59.7
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 8.5e-18 95.9 77 58.4
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 8.5e-18 95.9 77 61.0
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 8.5e-18 95.9 76 59.2
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.1e-17 95.5 77 58.4
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 1.9e-17 94.7 68 61.8
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 1.9e-17 94.7 75 60.0
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 2.5e-17 94.4 68 63.2
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 2.5e-17 94.4 68 63.2
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 2.5e-17 94.4 75 62.7
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 2.5e-17 94.4 108 44.4
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 2.5e-17 94.4 79 54.4
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 3.2e-17 94.0 61 68.9
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 3.2e-17 94.0 61 68.9
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.2e-17 94.0 75 62.7
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 3.2e-17 94.0 74 60.8
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 3.2e-17 94.0 75 61.3
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 5.5e-17 93.2 70 57.1
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 7.2e-17 92.8 71 64.8
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 7.2e-17 92.8 68 67.6
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 7.2e-17 92.8 66 63.6
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 9.4e-17 92.4 69 63.8
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 1.2e-16 92.0 69 66.7
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.6e-16 91.7 66 62.1
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 1.6e-16 91.7 66 62.1
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 1.6e-16 91.7 71 63.4
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 1.6e-16 91.7 68 63.2
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 3.6e-16 90.5 79 54.4
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 1.0e-15 89.0 68 60.3
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 1.0e-15 89.0 79 51.9
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 1.4e-15 88.6 61 62.3
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.8e-15 88.2 62 69.4
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.8e-15 88.2 81 55.6
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 6.8e-15 86.3 71 59.2
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 5.7e-14 83.2 75 54.7
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 5.7e-14 83.2 108 42.6
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 7.5e-14 82.8 71 56.3
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 7.5e-14 82.8 57 68.4
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 7.5e-14 82.8 78 47.4
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 9.7e-14 82.4 78 51.3
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.3e-13 82.0 80 51.2
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 1.7e-13 81.6 83 44.6
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 1.7e-13 81.6 75 54.7
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 2.8e-13 80.9 78 47.4
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 3.7e-13 80.5 78 51.3
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 6.3e-13 79.7 72 54.2
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 8.3e-13 79.3 74 45.9
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 1.1e-12 79.0 75 50.7
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.4e-12 78.6 79 49.4
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 1.8e-12 78.2 50 72.0
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 1.8e-12 78.2 77 49.4
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 2.4e-12 77.8 67 53.7
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 3.1e-12 77.4 57 63.2
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 4.1e-12 77.0 67 53.7
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 5.3e-12 76.6 71 52.1
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 5.3e-12 76.6 74 50.0
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 5.3e-12 76.6 74 50.0
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 5.3e-12 76.6 70 54.3
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 9.1e-12 75.9 52 71.2
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 9.1e-12 75.9 74 51.4
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 1.2e-11 75.5 71 52.1
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 2.7e-11 74.3 46 76.1
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 5.9e-11 73.2 49 63.3
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 7.7e-11 72.8 48 66.7
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.7e-10 71.6 74 45.9
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 3.8e-10 70.5 48 66.7
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 6.5e-10 69.7 52 63.5
Lalb_Chr01g0013691 Lupinus albus HOM05D001514 ORTHO05D007015 6.5e-10 69.7 48 72.9
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 1.9e-09 68.2 70 42.9
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 2.5e-09 67.8 44 65.9
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 4.2e-09 67.0 68 42.6
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 5.5e-09 66.6 52 57.7
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 5.5e-09 66.6 52 57.7
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 5.5e-09 66.6 40 72.5
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 1.6e-08 65.1 79 43.0
Lalb_Chr06g0171701 Lupinus albus HOM05D005674 ORTHO05D007015 3.6e-08 63.9 48 66.7
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 6.1e-08 63.2 39 74.4
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.0e-07 62.4 70 47.1
CAN.G1034.39 Capsicum annuum HOM05D005674 ORTHO05D033540 3.0e-07 60.8 46 58.7
Lalb_Chr19g0127261 Lupinus albus HOM05D005674 ORTHO05D007015 3.0e-07 60.8 37 78.4
Lalb_Chr16g0388951 Lupinus albus HOM05D001514 ORTHO05D002956 1.2e-06 58.9 32 84.4
Oeu056521.1 Olea europaea HOM05D002986 ORTHO05D007611 1.5e-06 58.5 71 42.3
ECA240G1124 Erigeron canadensis HOM05D005398 ORTHO05D000476 2.0e-06 58.2 72 40.3


User provided reference genes

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