Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 2.1e-91 339.0 163 100.0
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 1.1e-84 316.6 168 90.5
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 9.0e-71 270.4 168 76.2
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 4.5e-70 268.1 168 73.8
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.3e-69 266.5 168 75.6
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 9.4e-68 260.4 169 71.6
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 2.7e-67 258.8 170 72.4
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 2.7e-67 258.8 167 71.9
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 2.7e-67 258.8 167 71.9
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 6.1e-67 257.7 167 69.5
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 6.7e-66 254.2 168 69.0
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 2.5e-65 252.3 168 68.5
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.5e-65 252.3 168 67.3
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 3.3e-65 251.9 168 68.5
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 5.7e-65 251.1 168 66.7
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 5.7e-65 251.1 168 66.7
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 5.7e-65 251.1 168 66.7
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 9.7e-65 250.4 163 70.6
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 4.8e-64 248.1 172 68.0
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 1.1e-63 246.9 168 68.5
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 2.4e-63 245.7 168 66.7
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 2.4e-63 245.7 168 66.1
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 3.1e-63 245.4 168 66.1
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 9.1e-63 243.8 168 65.5
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.5e-62 243.0 168 66.1
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 3.4e-62 241.9 168 67.3
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 1.7e-61 239.6 168 68.5
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 2.9e-61 238.8 170 65.9
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 2.9e-61 238.8 168 63.7
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 3.8e-61 238.4 168 64.9
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 5.0e-61 238.0 168 66.1
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 5.0e-61 238.0 170 65.9
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 1.1e-60 236.9 168 66.7
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 1.4e-60 236.5 168 64.3
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 63.1
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 9.4e-60 233.8 168 66.1
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 1.2e-59 233.4 168 66.1
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 1.4e-58 229.9 141 74.5
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 3.0e-58 228.8 168 63.7
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 3.9e-58 228.4 168 64.3
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 3.9e-58 228.4 168 63.7
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 6.7e-58 227.6 170 62.4
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 8.8e-58 227.3 170 62.9
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 2.0e-57 226.1 170 61.8
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 4.4e-57 224.9 168 62.5
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 5.7e-57 224.6 168 61.3
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 5.7e-57 224.6 168 61.9
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 5.7e-57 224.6 168 62.5
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 5.7e-57 224.6 168 62.5
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 7.4e-57 224.2 168 61.9
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 7.4e-57 224.2 168 61.9
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 9.7e-57 223.8 168 62.5
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 9.7e-57 223.8 168 59.5
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.3e-56 223.4 168 61.3
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 1.7e-56 223.0 168 60.7
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 2.2e-56 222.6 168 61.9
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 2.2e-56 222.6 168 61.9
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 2.2e-56 222.6 168 61.9
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 2.2e-56 222.6 168 61.9
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 2.2e-56 222.6 168 63.7
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 2.8e-56 222.2 168 63.1
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 2.8e-56 222.2 179 58.1
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 3.7e-56 221.9 170 64.7
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 3.7e-56 221.9 153 69.9
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 6.3e-56 221.1 168 60.1
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 6.3e-56 221.1 168 63.1
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 8.2e-56 220.7 168 61.3
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 8.2e-56 220.7 168 60.7
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.1e-55 220.3 168 60.1
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.1e-55 220.3 168 60.7
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 4.1e-55 218.4 168 60.1
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 5.3e-55 218.0 168 60.1
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 5.3e-55 218.0 168 60.1
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 7.0e-55 217.6 168 60.7
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 9.1e-55 217.2 168 59.5
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 9.1e-55 217.2 205 52.7
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 59.5
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 5.9e-54 214.5 168 60.1
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 1.1e-52 210.3 168 57.7
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 1.5e-52 209.9 168 60.7
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 1.5e-52 209.9 168 60.7
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 1.9e-52 209.5 169 59.8
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 2.5e-52 209.1 173 59.0
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 2.5e-52 209.1 169 60.9
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 2.5e-52 209.1 169 60.9
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 4.2e-52 208.4 168 60.1
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 5.5e-52 208.0 168 58.9
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 5.5e-52 208.0 201 50.2
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 7.2e-52 207.6 168 57.1
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 2.7e-51 205.7 168 57.7
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 6.1e-51 204.5 184 56.5
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.0e-50 203.8 137 70.1
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 5.2e-50 201.4 172 57.0
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 5.2e-50 201.4 205 50.2
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.5e-49 199.9 169 56.8
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.5e-49 199.9 169 56.8
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 4.4e-49 198.4 169 55.0
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 7.4e-49 197.6 168 55.4
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 1.7e-48 196.4 168 54.8
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 2.8e-48 195.7 193 52.3
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 2.8e-48 195.7 182 51.1
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 4.8e-48 194.9 196 49.0
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 8.2e-48 194.1 155 54.8
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 2.4e-47 192.6 237 43.9
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 9.1e-47 190.7 189 49.7
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 1.2e-46 190.3 137 67.2
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 2.0e-46 189.5 151 58.9
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 3.5e-46 188.7 168 52.4
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 4.5e-46 188.3 168 52.4
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 5.9e-46 188.0 168 51.2
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 1.0e-45 187.2 188 47.9
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 2.9e-45 185.7 168 51.8
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 1.0e-42 177.2 167 53.9
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 1.0e-42 177.2 190 46.3
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 1.4e-42 176.8 165 48.5
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.0e-42 175.3 125 60.8
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 4.4e-41 171.8 190 45.3
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 4.8e-40 168.3 169 49.1
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 4.8e-40 168.3 145 51.0
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 6.3e-40 167.9 168 53.0
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 1.3e-37 160.2 126 61.1
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 9.4e-36 154.1 111 60.4
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 2.1e-35 152.9 169 45.0
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 8.0e-35 151.0 104 66.3
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 6.8e-34 147.9 168 49.4
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.5e-33 146.7 169 42.6
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 8.3e-32 141.0 97 70.1
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 2.4e-31 139.4 186 41.4
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 1.2e-30 137.1 174 42.0
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.9e-29 132.5 173 39.9
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 1.9e-28 129.8 162 43.8
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 1.8e-26 123.2 168 42.9
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 2.3e-26 122.9 95 58.9
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 4.0e-26 122.1 171 39.8
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 4.9e-24 115.2 109 50.5
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 8.3e-24 114.4 91 64.8
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 9.2e-23 110.9 142 36.6
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 1.2e-22 110.5 169 35.5
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 2.3e-21 106.3 163 36.2
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 7.3e-20 101.3 171 33.9
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 2.1e-19 99.8 169 33.1
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 2.8e-19 99.4 184 32.1
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 1.0e-18 97.4 67 67.2
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 3.5e-14 82.4 92 41.3
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 2.6e-09 66.2 60 50.0


User provided reference genes

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