Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 6.1e-112 407.5 209 100.0
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 1.3e-101 373.2 207 93.2
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 9.8e-86 320.5 207 78.7
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 1.9e-81 306.2 207 76.8
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 3.3e-73 278.9 211 70.1
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 3.1e-71 272.3 207 69.1
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 5.8e-70 268.1 211 68.7
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 1.9e-68 263.1 209 67.0
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 1.9e-68 263.1 212 66.0
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 4.1e-68 261.9 210 65.7
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 4.6e-67 258.5 210 66.7
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 4.6e-67 258.5 207 65.7
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 2.3e-66 256.1 212 64.6
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 2.5e-65 252.7 210 64.3
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 4.3e-65 251.9 209 66.5
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 4.3e-65 251.9 211 64.0
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 5.6e-65 251.5 210 63.8
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 9.5e-65 250.8 209 64.1
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 2.8e-64 249.2 210 65.2
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 6.2e-64 248.1 214 64.5
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 8.0e-64 247.7 211 64.0
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 2.6e-62 242.7 211 66.4
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 3.4e-62 242.3 216 63.9
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 7.5e-62 241.1 217 64.1
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 1.3e-61 240.4 216 63.4
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 1.3e-61 240.4 216 63.4
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 1.7e-61 240.0 212 66.0
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 5.4e-60 235.0 213 61.5
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 7.0e-60 234.6 215 63.3
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 2.7e-59 232.6 215 62.3
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 3.5e-59 232.3 211 62.6
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 2.3e-58 229.6 210 62.4
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 9.5e-57 224.2 209 61.7
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 9.5e-57 224.2 213 62.9
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 1.6e-56 223.4 213 58.2
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 1.6e-56 223.4 214 61.7
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 2.1e-56 223.0 211 62.6
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 4.7e-56 221.9 210 60.0
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 1.1e-55 220.7 210 60.5
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 1.4e-55 220.3 213 57.7
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 6.8e-55 218.0 210 60.0
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.7e-53 213.4 214 59.3
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 2.2e-53 213.0 214 56.1
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 3.7e-53 212.2 192 61.5
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 4.9e-53 211.8 212 58.0
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 1.4e-52 210.3 207 59.4
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 7.1e-52 208.0 212 59.0
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 4.6e-51 205.3 210 56.7
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 1.1e-49 200.7 224 58.0
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 2.8e-48 196.1 210 56.2
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 2.8e-48 196.1 223 57.0
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 3.6e-48 195.7 210 57.6
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 6.2e-48 194.9 221 57.0
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 6.2e-48 194.9 210 57.6
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 1.8e-47 193.4 124 81.5
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 3.1e-47 192.6 215 55.3
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 6.8e-47 191.4 221 56.1
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 3.4e-46 189.1 220 53.6
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 7.6e-46 188.0 146 71.2
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 7.6e-46 188.0 216 54.6
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 7.6e-46 188.0 206 55.3
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 2.2e-45 186.4 205 56.1
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 6.4e-45 184.9 197 57.9
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 8.4e-45 184.5 195 58.5
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 1.4e-44 183.7 205 54.1
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 9.2e-44 181.0 218 55.5
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 1.6e-43 180.3 217 52.1
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 3.5e-43 179.1 213 52.6
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 4.6e-43 178.7 211 51.2
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 4.6e-43 178.7 203 53.7
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 3.3e-41 172.6 213 53.1
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 4.3e-41 172.2 211 52.6
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 4.3e-41 172.2 212 52.8
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 5.6e-41 171.8 226 51.8
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 1.6e-40 170.2 211 50.2
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 2.1e-40 169.9 219 49.8
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 1.8e-39 166.8 220 50.9
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 1.8e-39 166.8 219 52.5
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 5.3e-39 165.2 220 48.6
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 1.2e-38 164.1 210 51.9
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 1.5e-38 163.7 211 48.3
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 4.4e-38 162.2 272 47.1
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 1.3e-37 160.6 203 50.7
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 1.1e-36 157.5 217 50.7
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 1.1e-36 157.5 219 47.0
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 3.2e-36 156.0 213 46.0
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 5.4e-36 155.2 219 50.2
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 6.0e-35 151.8 228 49.6
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 7.8e-35 151.4 223 48.4
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 1.0e-34 151.0 189 50.3
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 3.9e-34 149.1 214 46.7
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 5.1e-34 148.7 219 50.7
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 6.6e-34 148.3 179 53.1
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 6.6e-34 148.3 179 53.1
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 6.6e-34 148.3 215 47.9
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 8.7e-34 147.9 209 51.2
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 1.5e-33 147.1 208 51.0
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 1.5e-33 147.1 208 51.0
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 1.9e-33 146.7 209 50.7
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 1.9e-33 146.7 210 51.0
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 7.3e-33 144.8 223 49.8
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 9.6e-33 144.4 213 46.0
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 1.3e-32 144.1 212 47.2
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 1.6e-32 143.7 219 46.6
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 1.6e-32 143.7 210 46.2
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 4.8e-32 142.1 224 45.1
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 1.2e-30 137.5 215 43.3
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 9.9e-30 134.4 215 42.3
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 1.7e-29 133.7 170 51.2
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 2.2e-29 133.3 211 45.5
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 3.2e-28 129.4 214 42.1
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 9.3e-28 127.9 87 73.6
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 1.2e-27 127.5 160 48.8
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 1.2e-27 127.5 160 48.8
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 5.1e-26 122.1 204 48.0
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 2.5e-25 119.8 102 61.8
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 7.4e-25 118.2 137 51.1
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 3.1e-23 112.8 181 43.1
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 1.0e-21 107.8 195 41.0
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 2.2e-21 106.7 179 40.2
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 3.2e-20 102.8 180 45.0
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 3.2e-20 102.8 180 45.0
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 3.2e-20 102.8 180 45.0
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 9.3e-20 101.3 171 42.1
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 5.1e-18 95.5 103 55.3
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 1.1e-17 94.4 212 39.2
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 3.4e-14 82.8 213 34.3
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 1.7e-13 80.5 189 40.7
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 2.9e-13 79.7 208 36.5
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 2.5e-12 76.6 152 36.2
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 1.2e-11 74.3 113 47.8
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 1.2e-11 74.3 113 47.8
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 4.6e-11 72.4 113 46.9
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 4.6e-11 72.4 113 46.9
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 6.1e-11 72.0 184 37.0
Os07g0474300 Oryza sativa ssp. japonica HOM05D033341 ORTHO05D036979 1.8e-10 70.5 241 34.0
Thecc.04G308600 Theobroma cacao HOM05D005571 ORTHO05D006919 5.7e-09 65.5 75 52.0
Thecc.06G128900 Theobroma cacao HOM05D005571 ORTHO05D006919 9.7e-09 64.7 75 50.7
ECA238G3056 Erigeron canadensis HOM05D002204 ORTHO05D002875 1.6e-08 63.9 104 41.3
Thecc.07G149400 Theobroma cacao HOM05D005571 ORTHO05D004433 1.1e-07 61.2 68 51.5


User provided reference genes

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