Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 5.8e-135 484.2 236 100.0
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 2.3e-123 445.7 237 91.6
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 3.5e-92 342.0 224 75.9
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.0e-91 340.5 227 72.7
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 7.1e-85 317.8 226 66.4
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 1.3e-83 313.5 223 65.0
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 1.8e-83 313.2 228 67.1
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 1.5e-82 310.1 224 65.2
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 1.9e-82 309.7 231 64.1
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 1.9e-82 309.7 228 65.8
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 4.3e-82 308.5 222 62.6
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 4.3e-82 308.5 228 63.2
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 2.2e-81 306.2 220 66.8
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.8e-81 305.8 216 68.1
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 4.8e-81 305.1 229 63.3
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 1.4e-80 303.5 230 62.2
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.8e-80 303.1 235 62.1
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 2.4e-80 302.8 220 65.5
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 2.4e-80 302.8 211 65.4
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 3.1e-80 302.4 220 65.5
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 3.1e-80 302.4 233 63.1
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 5.3e-80 301.6 227 63.9
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 5.3e-80 301.6 236 62.7
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 1.2e-79 300.4 247 59.9
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 2.6e-79 299.3 218 64.7
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 5.9e-79 298.1 220 64.5
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 1.7e-78 296.6 230 62.6
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.2e-78 296.2 232 64.2
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 5.0e-78 295.0 232 64.2
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 6.5e-78 294.7 224 64.7
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 1.1e-77 293.9 223 62.8
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.9e-77 293.1 220 62.3
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 1.9e-77 293.1 218 64.7
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 1.9e-77 293.1 221 62.4
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 3.2e-77 292.4 213 63.8
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 9.4e-77 290.8 200 68.5
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 9.4e-77 290.8 207 66.7
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.2e-76 290.4 222 64.4
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 2.7e-76 289.3 227 61.7
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.7e-76 289.3 222 64.4
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 7.9e-76 287.7 223 61.9
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 1.0e-75 287.3 213 64.3
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 1.4e-75 287.0 224 62.9
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 3.9e-75 285.4 225 61.3
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 5.1e-75 285.0 222 63.1
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 1.1e-74 283.9 205 62.9
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 2.0e-74 283.1 220 62.3
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 7.4e-74 281.2 219 61.2
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 7.4e-74 281.2 221 61.5
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 9.7e-74 280.8 212 63.7
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.7e-73 280.0 232 56.9
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 2.8e-73 279.3 209 66.0
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 3.7e-73 278.9 206 66.0
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 6.3e-73 278.1 206 65.5
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 8.2e-73 277.7 219 61.6
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 1.1e-72 277.3 198 65.7
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 1.1e-72 277.3 219 62.1
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.4e-72 276.9 206 65.5
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.4e-72 276.9 207 67.1
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 1.8e-72 276.6 220 60.9
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.4e-72 276.2 211 64.0
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 4.1e-72 275.4 226 59.3
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 4.1e-72 275.4 214 60.7
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 9.1e-72 274.2 206 64.6
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 1.2e-71 273.9 211 62.6
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 2.0e-71 273.1 212 62.3
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.6e-71 272.7 221 57.9
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.6e-71 272.7 201 64.7
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 3.4e-71 272.3 214 60.7
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.4e-71 272.3 224 58.9
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.4e-71 272.3 224 58.9
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.0e-70 270.8 219 61.2
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 1.7e-70 270.0 219 59.8
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.2e-70 269.6 214 62.1
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 2.9e-70 269.2 220 55.9
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.9e-70 269.2 225 57.3
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 5.0e-70 268.5 181 68.0
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 5.0e-70 268.5 195 64.1
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 5.0e-70 268.5 200 63.5
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 5.0e-70 268.5 209 63.2
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 6.5e-70 268.1 218 61.5
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 8.5e-70 267.7 218 61.0
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 8.5e-70 267.7 222 59.5
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 8.5e-70 267.7 222 59.5
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.1e-69 267.3 209 62.7
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 2.5e-69 266.2 222 56.3
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 2.5e-69 266.2 230 58.7
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 3.2e-69 265.8 187 66.8
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 5.5e-69 265.0 212 63.2
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 9.4e-69 264.2 210 62.4
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.2e-68 263.8 218 61.0
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.2e-68 263.8 218 61.0
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 2.1e-68 263.1 211 60.7
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 4.7e-68 261.9 211 62.1
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 6.1e-68 261.5 255 52.9
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 6.1e-68 261.5 215 59.5
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 7.9e-68 261.2 207 61.4
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 7.9e-68 261.2 210 58.1
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 7.9e-68 261.2 219 56.2
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 1.0e-67 260.8 216 59.3
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 3.0e-67 259.2 206 58.3
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 3.9e-67 258.8 218 58.3
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 5.1e-67 258.5 220 58.2
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 6.7e-67 258.1 216 58.3
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.1e-66 257.3 211 60.2
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.5e-66 256.9 228 54.8
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 1.5e-66 256.9 221 57.5
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.0e-66 256.5 216 60.2
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 3.3e-66 255.8 210 59.5
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 4.4e-66 255.4 236 56.8
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 1.3e-65 253.8 218 57.3
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 2.2e-65 253.1 213 56.3
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 3.7e-65 252.3 213 56.3
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.4e-64 250.4 207 57.5
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 1.4e-64 250.4 213 55.9
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 1.4e-64 250.4 221 56.1
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.8e-64 250.0 207 58.5
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 3.1e-64 249.2 237 54.9
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-63 247.3 214 56.1
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 2.6e-63 246.1 207 57.0
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 3.5e-63 245.7 206 56.3
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.0e-62 244.2 207 58.5
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 1.3e-62 243.8 206 55.3
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 5.5e-61 238.4 227 51.1
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 9.4e-61 237.7 188 60.6
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.6e-60 236.9 208 54.8
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 2.1e-60 236.5 193 59.1
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 3.6e-60 235.7 215 53.0
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.4e-59 233.8 222 53.6
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 1.4e-59 233.8 215 54.0
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 2.3e-59 233.0 178 64.0
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 5.2e-59 231.9 210 56.2
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.7e-57 226.9 201 57.2
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.2e-57 226.5 193 56.5
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.8e-56 223.4 225 47.1
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.7e-54 216.9 193 54.9
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 5.5e-53 211.8 155 65.2
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 9.4e-53 211.1 193 53.4
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.8e-49 199.5 212 53.3
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 2.8e-49 199.5 190 53.2
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 8.3e-49 198.0 212 50.5
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 7.0e-48 194.9 127 72.4
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 1.2e-47 194.1 136 67.6
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 2.7e-47 193.0 172 56.4
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 5.9e-47 191.8 231 48.5
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 1.5e-45 187.2 208 44.2
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.0e-43 179.5 141 61.0
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 3.4e-42 176.0 178 52.2
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 1.2e-36 157.5 223 38.1
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.1e-36 156.8 120 64.2
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 2.8e-36 156.4 161 52.8
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 1.0e-35 154.5 109 68.8
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 3.0e-35 152.9 103 68.9
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 2.0e-34 150.2 213 39.9
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.9e-33 145.6 112 60.7
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 3.2e-32 142.9 108 60.2
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 5.4e-32 142.1 115 60.0
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.7e-31 139.8 137 53.3
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 1.3e-30 137.5 130 48.5
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 6.6e-30 135.2 103 60.2
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 4.0e-27 125.9 85 69.4
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 2.0e-26 123.6 110 52.7
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 2.6e-26 123.2 110 52.7
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 7.5e-26 121.7 137 47.4
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 7.5e-26 121.7 219 35.6
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 3.7e-25 119.4 148 38.5
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 6.0e-23 112.1 106 52.8
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 7.8e-23 111.7 99 53.5
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 2.5e-21 106.7 126 48.4
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 5.6e-21 105.5 67 65.7
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 9.5e-21 104.8 84 54.8
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 4.7e-20 102.4 87 54.0
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 8.9e-19 98.2 81 59.3
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 2.0e-18 97.1 85 51.8
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.1e-16 91.3 67 59.7
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 3.2e-16 89.7 77 51.9
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 3.5e-15 86.3 61 65.6
CDE02G3279 Ceratophyllum demersum HOM05D000901 ORTHO05D128872 5.1e-06 55.8 35 62.9


User provided reference genes

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