Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 2.0e-152 542.3 264 100.0
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.1e-125 452.6 295 78.3
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 4.4e-91 338.6 298 63.8
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 2.9e-79 299.3 232 68.5
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 3.9e-39 166.0 322 36.3
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 1.5e-38 164.1 307 36.5
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 4.0e-36 156.0 295 36.3
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.3e-31 140.2 331 33.5
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.9e-30 137.1 331 32.9
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 2.1e-29 133.7 235 37.4
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 3.6e-29 132.9 303 34.3
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 1.4e-28 131.0 352 32.4
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.8e-28 130.6 324 33.3
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 3.1e-28 129.8 230 38.3
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 1.2e-27 127.9 323 31.3
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 2.0e-27 127.1 327 33.0
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 4.5e-27 125.9 334 31.4
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 9.9e-27 124.8 234 38.0
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 1.3e-26 124.4 234 38.0
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 2.2e-26 123.6 306 33.7
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 2.9e-26 123.2 321 31.8
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 4.9e-26 122.5 243 36.2
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 6.4e-26 122.1 232 38.4
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 6.4e-26 122.1 264 34.8
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 2.4e-25 120.2 341 31.4
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.2e-25 119.8 338 29.9
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 4.2e-25 119.4 234 37.6
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 1.2e-24 117.9 318 31.8
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 2.7e-24 116.7 234 36.3
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.5e-24 116.3 304 31.2
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 3.5e-24 116.3 308 32.5
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 4.6e-24 115.9 249 35.3
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 6.0e-24 115.5 232 38.4
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 6.0e-24 115.5 271 32.1
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 6.0e-24 115.5 311 32.5
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 6.0e-24 115.5 299 30.4
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 6.0e-24 115.5 320 28.8
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 1.3e-23 114.4 249 33.7
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 3.0e-23 113.2 275 34.9
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 3.0e-23 113.2 365 25.5
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 5.1e-23 112.5 254 33.5
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 6.7e-23 112.1 330 31.5
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 2.5e-22 110.2 336 28.9
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 7.4e-22 108.6 267 31.8
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 9.6e-22 108.2 237 33.3
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.3e-21 107.8 253 34.8
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.8e-21 106.7 310 30.0
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.8e-21 106.7 243 33.3
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 3.7e-21 106.3 275 32.4
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 3.7e-21 106.3 326 29.1
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-20 104.8 301 30.2
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 1.4e-20 104.4 256 32.8
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 1.4e-20 104.4 333 30.0
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 6.9e-20 102.1 263 34.2
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.2e-19 101.3 251 30.7
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 2.0e-19 100.5 328 29.0
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.7e-18 97.4 270 31.5
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 2.9e-18 96.7 315 28.6
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 4.9e-18 95.9 330 31.2
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 6.5e-18 95.5 329 31.0
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 6.5e-18 95.5 322 31.7
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 1.1e-17 94.7 247 33.2
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 1.4e-17 94.4 316 30.7
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 1.4e-17 94.4 258 31.4
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 1.9e-17 94.0 284 30.3
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 2.5e-17 93.6 267 31.1
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 5.5e-17 92.4 225 31.1
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 7.1e-17 92.0 371 25.9
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 7.1e-17 92.0 320 30.9
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 9.3e-17 91.7 227 32.2
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 9.3e-17 91.7 230 30.9
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 9.3e-17 91.7 303 30.0
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 1.2e-16 91.3 252 30.6
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.2e-16 91.3 238 34.0
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.1e-16 90.5 228 33.3
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 3.5e-16 89.7 356 27.2
Eucgr.H00956 Eucalyptus grandis HOM05D066110 ORTHO05D003197 3.5e-16 89.7 225 31.6
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 3.5e-16 89.7 229 31.9
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.8e-15 87.4 228 31.1
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 3.9e-15 86.3 231 30.7
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 5.1e-15 85.9 229 29.7
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.1e-15 85.9 303 29.4
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 8.7e-15 85.1 296 29.1
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 8.7e-15 85.1 303 29.4
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 8.7e-15 85.1 239 31.8
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 1.1e-14 84.7 281 28.1
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 1.1e-14 84.7 230 30.4
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 1.9e-14 84.0 314 28.7
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 3.3e-14 83.2 267 29.6
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 4.3e-14 82.8 324 28.1
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 4.3e-14 82.8 344 27.9
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 5.7e-14 82.4 265 30.6
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 5.7e-14 82.4 323 27.6
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 5.7e-14 82.4 264 29.5
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 7.4e-14 82.0 344 27.3
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 9.6e-14 81.6 255 30.6
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 9.6e-14 81.6 228 30.7
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 9.6e-14 81.6 268 31.7
Medtr1g025620 Medicago truncatula HOM05D013708 ORTHO05D003197 1.3e-13 81.3 268 31.7
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 1.6e-13 80.9 380 26.3
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 1.6e-13 80.9 314 27.7
HPP92_007327 Vanilla planifolia HOM05D004095 ORTHO05D003197 1.6e-13 80.9 258 28.3
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 4.8e-13 79.3 138 36.2
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 4.8e-13 79.3 238 28.6
SHI08550 Sapria himalayana HOM05D003189 ORTHO05D003449 1.1e-12 78.2 245 30.2
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 1.4e-12 77.8 253 31.6
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 1.8e-12 77.4 368 28.5
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 1.8e-12 77.4 259 28.6
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 3.1e-12 76.6 259 30.9
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 9.0e-12 75.1 231 27.3
Actinidia03180 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.2e-11 74.7 250 31.2
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 1.5e-11 74.3 327 26.0
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 1.5e-11 74.3 320 26.6
GSVIVG01018727001 Vitis vinifera HOM05D004095 ORTHO05D003197 1.5e-11 74.3 112 40.2
TPR.G32858 Trifolium pratense HOM05D013708 ORTHO05D003197 3.4e-11 73.2 229 29.7
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 1.0e-10 71.6 246 28.0
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 1.0e-10 71.6 332 28.0
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 1.3e-10 71.2 251 30.3
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 1.3e-10 71.2 239 29.3
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 1.3e-10 71.2 239 28.9
Cpa.g.sc26.300 Carica papaya HOM05D004095 ORTHO05D003197 1.3e-10 71.2 86 45.3
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.7e-10 70.9 277 29.6
TAR625G0988 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.7e-10 70.9 184 33.2
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 2.2e-10 70.5 401 24.4
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 2.9e-10 70.1 177 32.8
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 3.8e-10 69.7 239 28.9
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 5.0e-10 69.3 256 28.1
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 8.5e-10 68.6 182 28.6
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 1.4e-09 67.8 294 24.8
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 1.4e-09 67.8 352 26.1
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.4e-09 67.8 236 28.8
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 1.9e-09 67.4 236 28.0
Lj1g0024400 Lotus japonicus HOM05D004095 ORTHO05D003197 1.9e-09 67.4 103 33.0
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.2e-09 66.6 178 28.1
Phvul.001G004700 Phaseolus vulgaris HOM05D013708 ORTHO05D003197 3.2e-09 66.6 82 43.9
GSVIVG01024025001 Vitis vinifera HOM05D004095 ORTHO05D003197 3.2e-09 66.6 79 44.3
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 5.5e-09 65.9 239 29.3
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 7.2e-09 65.5 278 29.9
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 7.2e-09 65.5 312 25.3
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 9.3e-09 65.1 351 27.6
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 1.2e-08 64.7 337 25.5
Glyma.17G259300 Glycine max HOM05D013708 ORTHO05D003197 2.1e-08 63.9 82 41.5
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 2.7e-08 63.5 297 23.2
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 2.7e-08 63.5 252 30.2
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 2.7e-08 63.5 341 27.6
CANSAT25G2395 Cannabis sativa HOM05D004095 ORTHO05D003197 3.6e-08 63.2 286 24.8
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 4.6e-08 62.8 245 27.3
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 7.9e-08 62.0 311 26.0
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 7.9e-08 62.0 260 27.7
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 7.9e-08 62.0 109 36.7
CDE02G0850 Ceratophyllum demersum HOM05D033134 ORTHO05D034264 1.0e-07 61.6 336 24.1
Glyma.14G220400 Glycine max HOM05D013708 ORTHO05D003197 1.0e-07 61.6 82 41.5
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 1.3e-07 61.2 224 27.7
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 1.3e-07 61.2 165 33.3
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 1.3e-07 61.2 192 31.2
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 1.8e-07 60.8 317 25.2
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 1.8e-07 60.8 256 30.1
TPR.G26385 Trifolium pratense HOM05D013708 ORTHO05D003197 1.8e-07 60.8 130 33.1
VMungo0647G0628 Vigna mungo HOM05D013708 ORTHO05D003197 1.8e-07 60.8 82 39.0
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 2.3e-07 60.5 89 40.4
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 3.0e-07 60.1 353 26.1
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 3.9e-07 59.7 93 37.6
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 5.1e-07 59.3 254 24.8
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 5.1e-07 59.3 237 26.6
CANSAT11G2253 Cannabis sativa HOM05D004095 ORTHO05D003197 5.1e-07 59.3 81 44.4
Duzib052G0919 Durio zibethinus HOM05D015147 ORTHO05D003197 5.1e-07 59.3 143 30.8
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 5.1e-07 59.3 229 26.2
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 5.1e-07 59.3 123 30.9
Migut.N03174 Erythranthe guttata HOM05D004095 ORTHO05D003197 6.7e-07 58.9 278 23.7
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 8.7e-07 58.5 320 24.7
COL.COLO4_17333 Corchorus olitorius HOM05D015147 ORTHO05D003197 1.1e-06 58.2 80 38.8
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 1.5e-06 57.8 257 25.3
Migut.O00908 Erythranthe guttata HOM05D004095 ORTHO05D003197 1.5e-06 57.8 282 23.0
Ah.00g000350 Amaranthus hybridus HOM05D004095 ORTHO05D003197 1.9e-06 57.4 127 29.1
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 1.9e-06 57.4 276 26.4
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 1.9e-06 57.4 266 27.4
Thecc.02G060400 Theobroma cacao HOM05D015147 ORTHO05D003197 2.5e-06 57.0 207 28.5
TPR.G38526 Trifolium pratense HOM05D004095 ORTHO05D003197 2.5e-06 57.0 75 34.7
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 5.7e-06 55.8 346 24.3
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 5.7e-06 55.8 312 24.7


User provided reference genes

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