Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.6e-272 942.2 495 100.0
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 6.9e-231 803.9 501 87.4
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.9e-210 734.9 501 80.4
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 1.6e-198 696.4 478 79.7
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.7e-197 693.0 501 73.7
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 4.8e-192 674.9 501 71.1
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 4.0e-186 655.2 501 70.7
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 2.6e-185 652.5 501 70.5
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 9.8e-185 650.6 501 70.9
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.6e-182 643.3 501 68.3
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.7e-181 639.8 510 68.4
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 2.1e-179 632.9 501 68.1
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 6.8e-178 627.9 499 67.1
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 1.1e-172 610.5 507 65.5
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 5.6e-172 608.2 502 67.9
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 6.8e-170 601.3 502 65.1
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.5e-169 600.1 505 64.8
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 2.9e-168 595.9 473 66.6
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 2.9e-168 595.9 474 67.1
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 3.2e-167 592.4 501 63.3
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 5.9e-166 588.2 504 65.7
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.3e-165 586.3 509 62.1
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 7.3e-164 581.3 512 63.1
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.8e-162 576.6 507 62.5
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 6.8e-162 574.7 506 63.0
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 8.9e-162 574.3 507 62.7
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-161 573.9 499 62.9
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 2.0e-161 573.2 501 61.3
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 2.6e-161 572.8 502 62.0
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.1e-159 567.4 472 66.5
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 1.4e-159 567.0 498 59.8
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.1e-159 565.5 509 62.7
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.0e-157 560.8 499 61.9
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.3e-157 560.5 502 59.8
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 3.9e-157 558.9 502 63.5
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.6e-155 553.5 501 61.1
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.1e-155 553.1 501 60.5
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.8e-155 552.7 522 59.0
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-154 550.4 530 57.9
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 4.0e-154 548.9 499 58.5
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 9.9e-153 544.3 499 58.3
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.7e-152 543.5 497 58.1
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.7e-152 543.5 510 59.0
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.7e-152 543.5 502 59.2
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.2e-152 543.1 433 66.1
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-150 537.3 508 58.3
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.7e-150 536.2 497 57.9
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.3e-149 533.9 499 58.5
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.3e-149 533.9 514 58.9
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.7e-149 533.5 489 59.3
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 1.7e-149 533.5 514 58.9
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.6e-149 531.2 491 58.9
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.1e-148 530.8 500 60.4
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 2.5e-148 529.6 497 55.9
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.6e-147 526.9 502 56.6
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.4e-146 523.9 506 55.9
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 2.4e-146 523.1 511 57.5
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.5e-145 520.4 515 57.5
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 5.8e-145 518.5 526 56.5
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.3e-144 517.3 506 55.7
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 2.2e-144 516.5 504 56.5
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.8e-144 515.8 505 56.6
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-143 513.8 477 60.2
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.9e-143 513.5 499 57.5
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 9.2e-143 511.1 515 56.7
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.2e-142 510.8 506 56.3
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.1e-142 510.0 507 56.2
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 2.1e-142 510.0 546 56.8
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 6.0e-142 508.4 499 55.5
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.3e-141 506.5 513 55.6
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 5.1e-141 505.4 508 58.3
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.6e-141 505.0 504 56.0
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 8.6e-141 504.6 475 56.6
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 6.2e-139 498.4 496 57.3
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.8e-138 496.9 511 57.5
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 3.1e-138 496.1 507 55.2
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 6.9e-138 495.0 503 53.3
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 6.9e-138 495.0 493 55.2
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 2.6e-137 493.0 505 57.0
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 5.8e-137 491.9 498 54.0
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 7.6e-137 491.5 499 53.3
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.3e-136 490.7 506 54.9
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.3e-136 490.7 502 55.6
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.3e-136 490.7 508 54.5
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 4.9e-136 488.8 460 59.3
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 6.4e-136 488.4 447 62.4
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 6.4e-136 488.4 524 55.0
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 8.4e-136 488.0 438 59.8
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 2.4e-135 486.5 524 53.8
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 3.2e-135 486.1 525 52.6
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 2.1e-134 483.4 501 54.1
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.7e-134 483.0 499 54.1
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 6.0e-134 481.9 510 55.5
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 6.0e-134 481.9 499 54.1
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 7.8e-134 481.5 423 61.7
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.0e-133 481.1 510 54.9
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.7e-133 480.3 504 54.2
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 3.0e-133 479.6 502 53.8
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 3.9e-133 479.2 499 53.9
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 6.6e-133 478.4 498 53.8
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.9e-132 476.9 503 54.1
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.3e-132 475.7 547 51.7
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 4.3e-132 475.7 478 57.5
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 5.6e-132 475.3 498 53.6
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 5.6e-132 475.3 508 53.9
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 7.3e-132 474.9 497 54.3
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 2.1e-131 473.4 499 52.9
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 6.2e-131 471.9 501 52.3
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.8e-130 470.3 547 51.4
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 4.0e-130 469.2 499 53.1
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.2e-129 467.6 500 53.8
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 3.4e-129 466.1 498 53.8
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 3.4e-129 466.1 601 46.8
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 5.8e-129 465.3 513 51.3
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 1.3e-128 464.2 499 52.7
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 4.2e-127 459.1 487 52.4
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.0e-125 453.0 468 56.0
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 3.1e-122 443.0 499 51.7
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 4.0e-122 442.6 496 51.4
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 2.0e-121 440.3 500 50.0
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 4.6e-118 429.1 415 53.7
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 4.6e-118 429.1 503 48.7
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 6.9e-114 415.2 478 49.8
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.2e-113 414.5 474 51.9
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 3.4e-113 412.9 486 52.5
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.9e-111 407.1 401 53.9
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 1.0e-109 401.4 515 50.1
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 7.4e-108 395.2 503 47.1
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.1e-106 389.8 450 52.4
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 1.6e-102 377.5 498 45.0
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 8.2e-99 365.2 411 53.3
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 8.5e-96 355.1 503 43.9
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 6.1e-94 349.0 423 48.5
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 7.9e-94 348.6 504 46.4
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 6.9e-90 335.5 486 47.1
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 5.5e-87 325.9 342 54.7
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 2.1e-86 323.9 231 69.7
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 2.3e-85 320.5 231 66.7
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 9.7e-84 315.1 480 38.3
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 8.2e-83 312.0 411 47.0
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.7e-80 304.3 386 44.3
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 1.7e-80 304.3 459 42.3
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.6e-78 297.7 320 46.9
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 3.0e-77 293.5 355 44.5
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 1.7e-72 277.7 334 45.5
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 2.5e-71 273.9 237 57.4
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 3.8e-64 250.0 195 63.1
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.7e-59 234.6 313 48.9
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.0e-52 211.1 265 48.3
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.6e-46 191.4 219 53.4
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 8.0e-46 189.1 171 58.5
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.8e-45 188.0 149 60.4
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 7.5e-36 156.0 385 30.9
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 2.7e-33 147.5 259 31.3
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 6.8e-29 132.9 205 35.1
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 1.7e-27 128.3 110 56.4
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.6e-25 121.7 228 40.4
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 1.1e-23 115.5 76 65.8
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.8e-21 108.2 71 66.2
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 1.3e-16 92.0 60 68.3
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 3.9e-16 90.5 124 48.4
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 1.6e-14 85.1 245 25.3
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 2.4e-13 81.3 116 50.0
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.2e-09 68.9 95 48.4
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 7.9e-09 66.2 43 69.8
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 1.0e-08 65.9 57 54.4


User provided reference genes

Program Settings