Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1762.7 901 100.0
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1625.5 903 90.5
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1582.8 903 88.6
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1518.8 903 85.0
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1414.4 899 78.0
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1353.2 906 76.0
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1349.3 914 75.1
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1349.3 909 74.6
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1346.6 936 73.0
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1326.6 897 75.0
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1322.8 908 73.9
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1320.4 895 74.7
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1318.9 905 74.1
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1318.5 905 74.0
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1317.0 881 75.3
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1314.7 905 74.0
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1305.4 984 68.4
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1299.3 904 73.3
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1299.3 948 70.9
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1298.5 909 72.8
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1289.2 904 72.7
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1271.1 897 72.5
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1263.8 901 72.4
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1262.7 895 74.6
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1262.3 906 70.9
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1260.4 898 71.8
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1259.6 909 73.7
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1251.5 908 71.0
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1247.6 905 72.9
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1247.3 893 73.5
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1245.7 890 70.4
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1245.0 909 70.7
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1245.0 888 72.1
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1242.6 907 70.3
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1237.2 910 70.4
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1236.9 906 71.0
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1233.0 898 72.7
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1230.3 898 71.2
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1229.2 898 70.4
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1227.6 905 71.9
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1226.5 896 71.1
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1226.5 898 72.9
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1225.3 901 68.0
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1224.2 898 69.7
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1223.4 882 71.0
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1223.0 891 69.6
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1222.6 892 70.7
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1222.2 898 69.7
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1218.8 896 69.2
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1216.8 887 69.3
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1214.9 884 69.8
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1213.7 921 70.8
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1213.7 889 71.1
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1212.6 923 71.7
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1211.4 899 72.4
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1210.3 922 67.1
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1209.5 893 69.8
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1209.5 927 68.5
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1208.4 901 68.0
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1206.0 909 68.4
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1204.1 921 67.9
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1203.0 901 67.6
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1202.6 895 69.7
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1199.5 905 66.9
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1198.3 894 68.6
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1197.6 900 67.8
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1197.6 942 67.3
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1197.2 910 69.2
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1193.3 897 69.0
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1184.5 916 68.0
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1181.4 914 67.5
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1180.6 888 69.4
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1178.3 900 67.7
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1176.8 900 67.7
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1162.1 901 64.6
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1161.0 903 65.6
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1146.7 917 65.5
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1146.0 929 63.6
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1144.8 755 75.9
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1142.1 901 66.6
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1141.3 906 65.7
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1141.3 896 65.1
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1140.9 905 66.1
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1139.0 919 64.4
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1135.2 886 64.6
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1132.9 914 63.8
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1129.8 906 64.6
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1127.1 892 65.5
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1125.5 892 65.5
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1123.6 916 64.1
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1123.2 896 66.2
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1117.1 926 63.2
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1115.1 910 65.3
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1112.1 892 64.8
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1108.2 898 65.1
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1108.2 895 63.8
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1105.9 917 65.2
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1102.8 906 67.1
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1101.7 900 64.2
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1100.9 903 64.1
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1099.0 900 63.1
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1096.3 906 63.7
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1094.3 913 63.9
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1088.6 917 64.0
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1087.8 911 63.8
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1087.8 902 63.4
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1084.7 908 63.5
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1084.3 911 63.7
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1078.5 914 63.9
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1077.0 907 63.6
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1076.6 918 64.2
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.2e-311 1073.2 918 62.5
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 7.4e-311 1070.5 921 63.1
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 6.1e-310 1067.4 953 60.7
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 3.0e-309 1065.1 812 68.2
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 8.2e-307 1057.0 817 67.1
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 3.0e-301 1038.5 787 68.4
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 5.7e-300 1034.2 812 66.9
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 1.4e-298 1029.6 923 61.5
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 3.8e-296 1021.5 886 60.5
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.1e-295 1020.0 785 65.9
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.2e-292 1010.0 615 79.7
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 1.2e-289 1000.0 898 59.0
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 1.6e-289 999.6 992 55.8
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 1.0e-288 996.9 864 62.7
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.6e-284 982.2 892 61.9
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.3e-283 979.9 907 59.9
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.6e-281 973.0 906 59.5
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 2.7e-273 945.7 588 77.2
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.0e-272 943.7 899 58.2
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 3.4e-268 928.7 936 55.0
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 8.3e-267 924.1 796 59.7
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 6.2e-254 881.3 795 57.5
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 8.1e-254 880.9 800 56.2
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 3.8e-251 872.1 914 51.5
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.2e-249 867.1 793 56.0
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 1.1e-247 860.5 904 51.1
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 3.4e-244 849.0 805 56.0
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.0e-240 837.4 791 56.3
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 5.8e-236 821.6 621 64.9
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 7.6e-236 821.2 799 54.6
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 1.6e-233 813.5 611 70.0
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 7.2e-210 734.9 572 62.1
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 6.7e-208 728.4 795 47.8
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 5.3e-205 718.8 804 48.0
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.8e-200 703.7 591 56.5
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 3.0e-192 676.4 635 58.7
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 1.6e-188 664.1 635 57.6
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 3.4e-183 646.4 613 51.5
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 8.8e-176 621.7 893 43.3
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 1.1e-170 604.7 578 56.1
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.7e-142 511.1 429 62.7
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 4.9e-142 509.6 569 47.3
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 8.6e-139 498.8 537 51.2
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 9.9e-119 432.2 597 39.2
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.4e-112 411.8 511 45.4
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 8.2e-105 386.0 401 55.4
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.5e-103 381.7 419 50.6
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.2e-95 355.5 264 65.2
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 5.1e-91 340.1 695 31.1
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.7e-84 317.8 225 65.3
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.3e-78 298.9 264 58.0
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 4.5e-71 273.9 175 73.1
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 2.7e-68 264.6 520 31.0
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 5.2e-59 233.8 505 29.1
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 5.2e-59 233.8 157 72.0
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 1.6e-36 159.1 190 51.6
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 5.6e-29 134.0 362 36.2
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 1.7e-22 112.5 65 83.1
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 4.7e-20 104.4 72 63.9
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.4e-19 102.8 74 68.9
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 9.3e-16 90.1 123 46.3
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 3.5e-15 88.2 152 40.8
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 1.3e-12 79.7 52 73.1


User provided reference genes

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