Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0169500 Salix brachista HOM05D000851 ORTHO05D003023 5.2e-99 364.4 183 100.0
Potri.005G220600 Populus trichocarpa HOM05D000851 ORTHO05D003023 9.5e-69 263.8 225 65.8
Sabra05G0169700 Salix brachista HOM05D000851 ORTHO05D003023 4.4e-66 255.0 187 74.3
Sabra05G0169300 Salix brachista HOM05D000077 ORTHO05D000552 3.9e-62 241.9 151 86.1
Sabra02G0034200 Salix brachista HOM05D000851 ORTHO05D003023 1.3e-46 190.3 214 56.1
Potri.002G042500 Populus trichocarpa HOM05D000851 ORTHO05D003023 1.1e-35 154.1 127 68.5
Manes.01G200100 Manihot esculenta HOM05D000851 ORTHO05D003023 1.3e-28 130.6 204 43.6
Thecc.01G264500 Theobroma cacao HOM05D000851 ORTHO05D003023 9.0e-27 124.4 223 38.1
Dinv34589 Davidia involucrata HOM05D000851 ORTHO05D003023 9.3e-24 114.4 209 37.3
Duzib211G0301 Durio zibethinus HOM05D000851 ORTHO05D003023 1.0e-22 110.9 223 35.0
COL.COLO4_08269 Corchorus olitorius HOM05D000851 ORTHO05D003023 1.8e-22 110.2 189 41.3
TWI12G1468 Tripterygium wilfordii HOM05D000851 ORTHO05D003023 3.9e-22 109.0 213 35.7
TAR365G0801 Trochodendron aralioides HOM05D000851 ORTHO05D003023 8.7e-22 107.8 216 35.6
Duzib133G0219 Durio zibethinus HOM05D000851 ORTHO05D003023 5.6e-21 105.1 223 35.9
CSS0020864 Camellia sinensis var. sinensis HOM05D000851 ORTHO05D003023 1.3e-20 104.0 207 37.2
CSS0046457 Camellia sinensis var. sinensis HOM05D000851 ORTHO05D003023 1.3e-20 104.0 207 37.2
Gohir.A08G045500 Gossypium hirsutum HOM05D000851 ORTHO05D003023 1.3e-20 104.0 187 40.1
Gorai.004G056900 Gossypium raimondii HOM05D000851 ORTHO05D003023 2.1e-20 103.2 187 40.1
Atru.chr5.1608 Acer truncatum HOM05D000851 ORTHO05D003023 2.8e-20 102.8 226 34.5
Haze_04382 Corylus avellana HOM05D000851 ORTHO05D003023 2.8e-20 102.8 195 37.9
Cfa002348 Carpinus fangiana HOM05D000851 ORTHO05D003023 8.2e-20 101.3 223 36.3
Nn1g02635 Nelumbo nucifera HOM05D000851 ORTHO05D003023 3.1e-19 99.4 216 35.6
Cfa006392 Carpinus fangiana HOM05D000851 ORTHO05D003023 4.0e-19 99.0 187 38.5
Potri.019G012200 Populus trichocarpa HOM05D000851 ORTHO05D003023 2.6e-18 96.3 163 39.9
TAR636G0853 Trochodendron aralioides HOM05D000851 ORTHO05D003023 2.6e-18 96.3 193 36.3
CiPaw.04G183500 Carya illinoinensis HOM05D000851 ORTHO05D003023 5.8e-18 95.1 211 36.5
QL04p081248 Quercus lobata HOM05D000851 ORTHO05D003023 2.2e-17 93.2 200 35.5
Nn3g19550 Nelumbo nucifera HOM05D000851 ORTHO05D003023 8.4e-17 91.3 224 33.9
GSVIVG01036252001 Vitis vinifera HOM05D000851 ORTHO05D003023 1.1e-16 90.9 147 42.9
Ciclev10018827m.g Citrus clementina HOM05D000851 ORTHO05D003023 1.9e-16 90.1 215 34.4
CANSAT01G1353 Cannabis sativa HOM05D000851 ORTHO05D003023 2.5e-16 89.7 203 35.5
Lj2C1156T1 Lonicera japonica HOM05D000851 ORTHO05D003023 3.2e-16 89.4 169 37.9
Oeu039685.3 Olea europaea HOM05D000851 ORTHO05D003023 5.5e-16 88.6 214 33.2
Aqoxy5G00304 Aquilegia oxysepala HOM05D000851 ORTHO05D003023 7.1e-16 88.2 184 34.8
Sabra19G0017500 Salix brachista HOM05D000851 ORTHO05D003023 3.5e-15 85.9 141 39.7
MD05G1203200 Malus domestica HOM05D000851 ORTHO05D003023 6.0e-15 85.1 173 37.6
PSO832G4493 Papaver somniferum HOM05D000851 ORTHO05D003023 6.0e-15 85.1 177 36.7
Sabra19G0024800 Salix brachista HOM05D000851 ORTHO05D003023 6.0e-15 85.1 141 39.7
Nitab4.5_0000086g0300 Nicotiana tabacum HOM05D000851 ORTHO05D003023 1.0e-14 84.3 176 35.8
Prupe.6G346700 Prunus persica HOM05D000851 ORTHO05D003023 1.0e-14 84.3 191 36.6
Sed0025170 Sechium edule HOM05D000851 ORTHO05D003023 1.0e-14 84.3 169 37.3
Aqoxy2G03578 Aquilegia oxysepala HOM05D000851 ORTHO05D003023 6.7e-14 81.6 172 34.9
PSO210G5055 Papaver somniferum HOM05D000851 ORTHO05D003023 6.7e-14 81.6 177 35.0
CiPaw.07G069700 Carya illinoinensis HOM05D000851 ORTHO05D003023 8.7e-14 81.3 184 32.6
Manes.08G136800 Manihot esculenta HOM05D000851 ORTHO05D003023 1.1e-13 80.9 154 36.4
Cc01_g18640 Coffea canephora HOM05D000851 ORTHO05D003023 2.5e-13 79.7 166 36.1
Nitab4.5_0004328g0010 Nicotiana tabacum HOM05D000851 ORTHO05D003023 2.5e-13 79.7 176 35.8
Peaxi162Scf00719g00312 Petunia axillaris HOM05D000851 ORTHO05D003023 2.5e-13 79.7 157 40.1
RcHm_v2.0_Chr6g0289141 Rosa chinensis HOM05D000851 ORTHO05D003023 2.5e-13 79.7 216 31.5
Dinv05261 Davidia involucrata HOM05D000851 ORTHO05D003023 3.3e-13 79.3 215 31.6
Sed0008916 Sechium edule HOM05D000851 ORTHO05D003023 3.3e-13 79.3 159 39.0
Ciclev10027718m.g Citrus clementina HOM05D000851 ORTHO05D003023 4.3e-13 79.0 205 33.2
Lalb_Chr06g0162571 Lupinus albus HOM05D000851 ORTHO05D003023 4.3e-13 79.0 175 38.3
vmacro02637 Vaccinium macrocarpon HOM05D000851 ORTHO05D003023 4.3e-13 79.0 158 39.9
GSVIVG01000763001 Vitis vinifera HOM05D000851 ORTHO05D003023 4.3e-13 79.0 190 32.6
Rhsim13G0032000 Rhododendron simsii HOM05D000851 ORTHO05D003023 7.4e-13 78.2 155 40.0
RcHm_v2.0_Chr3g0450371 Rosa chinensis HOM05D000851 ORTHO05D003023 9.7e-13 77.8 170 35.3
Atru.chr2.860 Acer truncatum HOM05D000851 ORTHO05D003023 1.3e-12 77.4 197 31.0
Ca_09700_v3 Cicer arietinum L. HOM05D000851 ORTHO05D003023 1.3e-12 77.4 187 32.6
Prupe.8G229600 Prunus persica HOM05D000851 ORTHO05D003023 1.3e-12 77.4 181 35.4
Lj5g0019344 Lotus japonicus HOM05D000851 ORTHO05D003023 1.6e-12 77.0 169 30.8
Gohir.D07G216300 Gossypium hirsutum HOM05D000851 ORTHO05D003023 2.2e-12 76.6 195 31.8
Gorai.013G104100 Gossypium raimondii HOM05D000851 ORTHO05D003023 2.2e-12 76.6 195 31.8
MD12G1244200 Malus domestica HOM05D000851 ORTHO05D003023 2.2e-12 76.6 214 32.2
Gohir.A07G210300 Gossypium hirsutum HOM05D000851 ORTHO05D003023 2.8e-12 76.3 195 31.8
QL12p042978 Quercus lobata HOM05D001376 ORTHO05D003384 2.8e-12 76.3 51 72.5
Haze_24557 Corylus avellana HOM05D000851 ORTHO05D003023 3.7e-12 75.9 224 31.2
MBI11_g10263_MAGBIO Magnolia biondii HOM05D000851 ORTHO05D003023 6.3e-12 75.1 169 34.9
Os03g0799200 Oryza sativa ssp. japonica HOM05D000851 ORTHO05D003023 8.2e-12 74.7 169 32.5
QL03p028473 Quercus lobata HOM05D000851 ORTHO05D003023 8.2e-12 74.7 179 31.8
FAN05G0024 Fragaria x ananassa HOM05D000851 ORTHO05D003023 1.4e-11 73.9 172 37.2
FAN05G1063 Fragaria x ananassa HOM05D000851 ORTHO05D003023 1.4e-11 73.9 172 37.2
Potri.013G043400 Populus trichocarpa HOM05D000851 ORTHO05D003023 1.4e-11 73.9 181 32.6
FAN09G3454 Fragaria x ananassa HOM05D000851 ORTHO05D003023 1.8e-11 73.6 172 36.6
Glyma.13G120400 Glycine max HOM05D000851 ORTHO05D003023 1.8e-11 73.6 209 32.1
Lj7A491T46 Lonicera japonica HOM05D000851 ORTHO05D003023 2.4e-11 73.2 149 34.9
Prupe.8G128800 Prunus persica HOM05D000851 ORTHO05D003023 2.4e-11 73.2 177 34.5
Psat6g055960 Pisum sativum HOM05D000851 ORTHO05D003023 3.1e-11 72.8 203 34.0
CANSAT54G2416 Cannabis sativa HOM05D000851 ORTHO05D003023 4.1e-11 72.4 171 33.9
Sc20g0000480 Simmondsia chinensis HOM05D000851 ORTHO05D003023 4.1e-11 72.4 142 35.2
FAN14G2146 Fragaria x ananassa HOM05D000851 ORTHO05D003023 5.3e-11 72.0 172 36.6
FAN14G3846 Fragaria x ananassa HOM05D000851 ORTHO05D003023 5.3e-11 72.0 172 36.6
Psat3g187960 Pisum sativum HOM05D000851 ORTHO05D003023 5.3e-11 72.0 178 34.8
Solyc09g066140.3 Solanum lycopersicum HOM05D000851 ORTHO05D003023 5.3e-11 72.0 176 31.8
THA.LOC104805830 Tarenaya hassleriana HOM05D000851 ORTHO05D003023 5.3e-11 72.0 145 38.6
FAN15G0482 Fragaria x ananassa HOM05D000851 ORTHO05D003023 6.9e-11 71.6 212 29.7
FAN20G1571 Fragaria x ananassa HOM05D000851 ORTHO05D003023 6.9e-11 71.6 212 29.7
PGSC0003DMG400031422 Solanum tuberosum HOM05D000851 ORTHO05D003023 6.9e-11 71.6 176 32.4
Hund06944 Selenicereus undatus HOM05D000851 ORTHO05D003023 9.0e-11 71.2 149 38.3
FvH4_6g02500 Fragaria vesca HOM05D000851 ORTHO05D003023 1.2e-10 70.9 172 36.6
MBI04_g38147_MAGBIO Magnolia biondii HOM05D000851 ORTHO05D003023 1.2e-10 70.9 217 31.8
MD04G1227500 Malus domestica HOM05D000851 ORTHO05D003023 1.2e-10 70.9 166 33.1
Sopen09g027900 Solanum pennellii HOM05D000851 ORTHO05D003023 1.2e-10 70.9 176 34.1
FvH4_2g22220 Fragaria vesca HOM05D000851 ORTHO05D003023 1.5e-10 70.5 188 31.9
FAN24G1431 Fragaria x ananassa HOM05D000851 ORTHO05D003023 1.5e-10 70.5 188 31.9
Glyma.19G246400 Glycine max HOM05D000851 ORTHO05D003023 1.5e-10 70.5 193 30.6
Sabra13G0039700 Salix brachista HOM05D000851 ORTHO05D003023 2.0e-10 70.1 181 30.9
DCAR_012523 Daucus carota HOM05D000851 ORTHO05D003023 3.4e-10 69.3 177 33.3
Os10g0414800 Oryza sativa ssp. japonica HOM05D000851 ORTHO05D003960 4.5e-10 68.9 159 36.5
FAN02G3896 Fragaria x ananassa HOM05D000851 ORTHO05D003023 5.9e-10 68.6 169 37.3
Medtr7g115350 Medicago truncatula HOM05D000851 ORTHO05D003023 7.7e-10 68.2 201 29.9
Lalb_Chr04g0262191 Lupinus albus HOM05D000851 ORTHO05D003023 1.3e-09 67.4 170 33.5
TPR.G6980 Trifolium pratense HOM05D000851 ORTHO05D003023 1.3e-09 67.4 190 31.6
HPP92_016634 Vanilla planifolia HOM05D000851 ORTHO05D003023 1.3e-09 67.4 93 44.1
ATR0051G052 Amborella trichopoda HOM05D000851 ORTHO05D003960 1.7e-09 67.0 159 32.1
ClCG07G000700 Citrullus lanatus HOM05D000851 ORTHO05D003023 1.7e-09 67.0 182 31.9
FAN27G2886 Fragaria x ananassa HOM05D000851 ORTHO05D003023 1.7e-09 67.0 212 29.2
Glyma.03G248800 Glycine max HOM05D000851 ORTHO05D003023 2.2e-09 66.6 177 31.6
arahy.Tifrunner.gnm1.ann1.DCE16H Arachis hypogaea HOM05D000851 ORTHO05D003023 3.8e-09 65.9 168 32.1
Cpa.g.c36424 Carica papaya HOM05D000851 ORTHO05D003023 3.8e-09 65.9 178 33.7
Sed0000665 Sechium edule HOM05D000851 ORTHO05D003023 3.8e-09 65.9 53 58.5
Oeu058809.1 Olea europaea HOM05D000851 ORTHO05D003023 5.0e-09 65.5 169 30.2
arahy.Tifrunner.gnm1.ann1.0I6I28 Arachis hypogaea HOM05D000851 ORTHO05D003023 8.5e-09 64.7 184 31.0
arahy.Tifrunner.gnm1.ann1.GYBK8P Arachis hypogaea HOM05D000851 ORTHO05D003023 1.1e-08 64.3 181 32.0
Ca_09433_v3 Cicer arietinum L. HOM05D000851 ORTHO05D003023 1.1e-08 64.3 176 33.5
PGR142G1822 Punica granatum HOM05D000851 ORTHO05D003023 1.1e-08 64.3 161 36.6
HPP92_026341 Vanilla planifolia HOM05D000851 ORTHO05D003023 1.4e-08 63.9 178 29.8
arahy.Tifrunner.gnm1.ann1.FLY1RE Arachis hypogaea HOM05D000851 ORTHO05D003023 1.9e-08 63.5 177 31.6
MBI11_g43388_MAGBIO Magnolia biondii HOM05D000851 ORTHO05D003023 2.5e-08 63.2 168 32.1
unitig_0.g149 Utricularia gibba HOM05D000851 ORTHO05D003023 2.5e-08 63.2 140 37.9
CsaV3_6G037150 Cucumis sativus L. HOM05D000851 ORTHO05D003023 3.2e-08 62.8 182 30.8
AUR62001061 Chenopodium quinoa HOM05D000851 ORTHO05D003023 5.5e-08 62.0 175 31.4
Migut.B01116 Erythranthe guttata HOM05D000851 ORTHO05D003023 5.5e-08 62.0 160 33.1
ECA248G1828 Erigeron canadensis HOM05D000851 ORTHO05D003023 7.2e-08 61.6 130 39.2
Actinidia36645 Actinidia chinensis HOM05D000851 ORTHO05D003049 9.4e-08 61.2 172 30.2
PSO063G5819 Papaver somniferum HOM05D000851 ORTHO05D003023 1.2e-07 60.8 150 34.0
Phvul.006G103500 Phaseolus vulgaris HOM05D000851 ORTHO05D003023 1.2e-07 60.8 200 29.5
Zm00001eb151710 Zea mays HOM05D000851 ORTHO05D003023 1.2e-07 60.8 161 29.8
Zm00001eb223070 Zea mays HOM05D000851 ORTHO05D003960 1.6e-07 60.5 142 36.6
Eucgr.B02126 Eucalyptus grandis HOM05D000851 ORTHO05D003023 2.1e-07 60.1 176 30.7
TAR629G1069 Trochodendron aralioides HOM05D000851 ORTHO05D003960 2.1e-07 60.1 147 31.3
VMungo0540G0971 Vigna mungo HOM05D000851 ORTHO05D003023 2.1e-07 60.1 180 30.0
AUR62004890 Chenopodium quinoa HOM05D000851 ORTHO05D003023 4.6e-07 58.9 175 30.3
CAN.G1536.1 Capsicum annuum HOM05D000851 ORTHO05D003023 6.1e-07 58.5 175 31.4
CAN.G2029.1 Capsicum annuum HOM05D000851 ORTHO05D003023 6.1e-07 58.5 175 31.4
MELO3C014398.2 Cucumis melo HOM05D000851 ORTHO05D003023 1.0e-06 57.8 182 29.1
SalBow8G2324 Salvia bowleyana HOM05D000851 ORTHO05D003023 1.0e-06 57.8 135 32.6
Aa31sc20G20 Aethionema arabicum HOM05D000851 ORTHO05D003023 1.8e-06 57.0 141 32.6
Lsat_1_v5_gn_3_55560 Lactuca sativa HOM05D000851 ORTHO05D003049 3.0e-06 56.2 164 29.3
Phvul.007G178800 Phaseolus vulgaris HOM05D000851 ORTHO05D003023 3.0e-06 56.2 159 33.3
MD13G1021300 Malus domestica HOM05D000851 ORTHO05D003049 3.9e-06 55.8 188 28.7
Actinidia12375 Actinidia chinensis HOM05D000851 ORTHO05D003049 6.7e-06 55.1 167 29.9
Aqoxy3G03185 Aquilegia oxysepala HOM05D000851 ORTHO05D003960 6.7e-06 55.1 142 31.7
Thhalv10006726m.g Eutrema salsugineum HOM05D000851 ORTHO05D003023 6.7e-06 55.1 70 45.7
HanXRQChr08g0212561 Helianthus annuus HOM05D000851 ORTHO05D003049 6.7e-06 55.1 196 27.6
MD16G1022600 Malus domestica HOM05D000851 ORTHO05D003049 8.8e-06 54.7 191 28.8
vmacro07693 Vaccinium macrocarpon HOM05D000851 ORTHO05D003049 8.8e-06 54.7 205 25.4


User provided reference genes

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