Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 3.9e-207 724.5 367 100.0
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 2.7e-163 578.9 353 85.0
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 3.2e-148 528.9 353 79.3
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 3.5e-123 445.7 358 69.6
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 2.7e-91 339.7 354 55.6
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 1.4e-90 337.4 361 55.1
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 2.9e-85 319.7 353 55.5
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 4.2e-84 315.8 356 52.8
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 6.1e-83 312.0 356 52.8
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.4e-82 310.8 362 53.0
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 5.2e-82 308.9 349 54.7
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.1e-79 301.2 357 51.8
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 8.5e-77 291.6 363 50.7
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 1.6e-75 287.3 367 50.1
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 1.8e-74 283.9 359 51.0
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.8e-74 283.9 353 51.8
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 4.0e-74 282.7 357 48.7
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 6.8e-74 282.0 353 50.7
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 2.0e-73 280.4 264 61.4
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 4.4e-73 279.3 358 49.4
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 3.7e-72 276.2 343 49.9
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 1.1e-71 274.6 356 48.6
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.8e-71 273.9 355 51.0
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 2.4e-71 273.5 365 50.1
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 2.3e-69 266.9 357 47.6
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 1.2e-67 261.2 287 56.8
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 2.8e-67 260.0 356 47.8
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 4.0e-66 256.1 357 47.3
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 2.2e-64 250.4 359 44.6
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.2e-64 250.4 361 44.3
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 6.3e-64 248.8 338 48.2
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.4e-63 246.9 361 44.3
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 9.2e-63 245.0 357 45.7
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.2e-62 244.6 357 45.7
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 2.0e-62 243.8 356 45.5
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 7.8e-62 241.9 428 42.1
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.0e-61 241.5 357 46.5
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 2.3e-61 240.4 357 45.7
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 3.8e-61 239.6 331 47.1
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.5e-60 237.7 375 43.2
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 5.6e-60 235.7 359 46.0
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 7.3e-60 235.3 358 45.8
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 9.5e-60 235.0 360 44.7
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 2.1e-59 233.8 363 43.8
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 6.1e-59 232.3 342 47.7
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 8.0e-59 231.9 243 57.6
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 1.4e-58 231.1 325 45.5
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 3.0e-58 229.9 380 45.3
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.0e-58 229.6 285 50.5
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.2e-57 228.0 358 44.1
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 7.5e-57 225.3 358 44.7
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 1.7e-56 224.2 328 45.4
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 6.4e-56 222.2 356 44.7
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 6.4e-56 222.2 285 50.2
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 5.4e-55 219.2 289 49.8
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 2.7e-54 216.9 360 43.1
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.3e-53 214.5 361 44.3
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 1.1e-52 211.5 351 42.7
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 2.1e-51 207.2 363 42.4
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 4.7e-51 206.1 358 40.8
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 4.7e-51 206.1 374 41.4
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 1.4e-50 204.5 342 44.4
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 4.0e-50 203.0 361 41.8
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 5.2e-50 202.6 353 42.8
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 5.2e-50 202.6 357 43.4
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 1.5e-49 201.1 353 41.4
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 4.4e-49 199.5 349 44.7
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.3e-48 198.0 359 41.8
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 1.3e-48 198.0 345 42.9
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 3.7e-48 196.4 345 42.6
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 3.7e-48 196.4 361 41.3
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 8.3e-48 195.3 335 40.9
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 9.2e-47 191.8 287 46.7
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 2.0e-46 190.7 363 40.5
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 2.0e-46 190.7 283 47.3
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 2.3e-45 187.2 336 42.9
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 6.6e-45 185.7 320 44.7
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 6.6e-45 185.7 351 39.9
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 6.6e-45 185.7 285 46.3
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 8.6e-45 185.3 357 40.9
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 8.6e-45 185.3 238 47.1
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 5.6e-44 182.6 337 41.2
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 1.2e-43 181.4 362 41.2
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 1.6e-43 181.0 262 45.4
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 1.6e-43 181.0 366 38.5
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.6e-43 181.0 345 40.3
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 2.8e-43 180.3 367 39.0
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 3.6e-43 179.9 285 45.6
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 1.1e-42 178.3 362 41.2
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 5.2e-42 176.0 285 45.6
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 6.8e-42 175.6 364 39.3
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 6.8e-42 175.6 189 50.3
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 1.2e-41 174.9 361 38.0
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 4.4e-41 172.9 300 43.0
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 9.9e-41 171.8 362 39.5
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 2.2e-40 170.6 357 39.5
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 4.9e-40 169.5 305 41.6
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 4.9e-40 169.5 358 40.8
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 8.3e-40 168.7 359 38.7
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 3.2e-39 166.8 354 36.4
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 9.2e-39 165.2 367 39.0
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 4.6e-38 162.9 354 36.7
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 7.8e-38 162.2 370 39.5
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 1.0e-37 161.8 212 47.2
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 2.3e-37 160.6 354 36.4
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 3.0e-37 160.2 353 35.7
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 6.6e-37 159.1 303 38.9
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 3.3e-36 156.8 356 36.2
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 1.6e-35 154.5 307 36.8
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.6e-35 154.5 319 37.0
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 3.6e-35 153.3 222 46.8
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 6.2e-35 152.5 348 36.2
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 1.1e-34 151.8 222 46.8
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 1.4e-34 151.4 371 36.4
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 1.4e-34 151.4 302 38.4
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 1.8e-34 151.0 361 36.3
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 2.4e-34 150.6 358 36.0
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 5.2e-34 149.4 303 38.0
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 8.9e-34 148.7 356 34.3
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 2.6e-33 147.1 311 39.2
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 3.4e-33 146.7 306 37.9
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 3.4e-33 146.7 358 34.9
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 4.4e-33 146.4 307 37.8
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.4e-33 146.4 356 34.8
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.3e-32 144.8 353 34.0
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 2.9e-32 143.7 314 35.0
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 2.9e-32 143.7 312 37.5
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 3.8e-32 143.3 315 35.2
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 3.8e-32 143.3 300 36.3
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 4.9e-32 142.9 308 37.3
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 4.9e-32 142.9 343 36.4
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 3.2e-31 140.2 313 34.8
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 5.4e-31 139.4 300 36.0
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 9.2e-31 138.7 231 45.0
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 2.1e-30 137.5 300 35.7
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 3.0e-29 133.7 236 40.3
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 3.0e-29 133.7 305 35.1
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 5.6e-28 129.4 366 32.2
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 6.2e-27 125.9 326 33.1
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 8.1e-27 125.6 224 41.1
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 1.1e-26 125.2 248 40.3
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.4e-26 124.0 302 33.8
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 1.5e-25 121.3 358 33.0
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 3.2e-23 113.6 285 37.5
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 1.2e-22 111.7 78 74.4
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 3.9e-21 106.7 170 41.8
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 4.3e-20 103.2 144 49.3
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 1.6e-19 101.3 246 34.1
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 3.6e-19 100.1 143 49.0
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 6.9e-18 95.9 194 35.6
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 4.5e-17 93.2 275 33.5
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 9.9e-17 92.0 97 54.6
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.4e-15 88.2 190 35.3
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.9e-15 87.8 343 26.5
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 7.1e-15 85.9 190 37.4
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 1.9e-12 77.8 62 54.8
Pp3c6_23650 Physcomitrium patens HOM05D002346 ORTHO05D002452 1.2e-09 68.6 129 41.9
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 2.9e-08 63.9 121 45.5
Pp3c16_13490 Physcomitrium patens HOM05D002346 ORTHO05D002452 2.9e-08 63.9 127 36.2
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 6.4e-08 62.8 151 33.1
arahy.Tifrunner.gnm1.ann1.EFG4M9 Arachis hypogaea HOM05D001047 ORTHO05D000768 1.4e-07 61.6 163 31.3
Peaxi162Scf00376g00327 Petunia axillaris HOM05D002346 ORTHO05D002452 1.4e-07 61.6 137 32.8
Pp3c25_6300 Physcomitrium patens HOM05D002346 ORTHO05D002452 1.4e-07 61.6 204 32.4
arahy.Tifrunner.gnm1.ann1.BEZ7GQ Arachis hypogaea HOM05D001047 ORTHO05D000768 4.2e-07 60.1 163 31.3
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 4.2e-07 60.1 93 39.8
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 4.2e-07 60.1 93 39.8
PGR142G0155 Punica granatum HOM05D001047 ORTHO05D000768 5.5e-07 59.7 203 29.1
Pp3c25_6330 Physcomitrium patens HOM05D002346 ORTHO05D002452 9.3e-07 58.9 149 34.9
Pp3c5_11800 Physcomitrium patens HOM05D002346 ORTHO05D000768 1.6e-06 58.2 216 31.9
Ah.16g109020 Amaranthus hybridus HOM05D004643 ORTHO05D059934 4.6e-06 56.6 31 83.9
FvH4_5g17550 Fragaria vesca HOM05D002346 ORTHO05D002452 4.6e-06 56.6 276 26.4
Manes.14G172400 Manihot esculenta HOM05D002346 ORTHO05D002452 4.6e-06 56.6 171 32.7
Sc18g0002760 Simmondsia chinensis HOM05D001047 ORTHO05D000768 4.6e-06 56.6 154 32.5
FAN04G1846 Fragaria x ananassa HOM05D002346 ORTHO05D002452 6.0e-06 56.2 227 29.1
Glyma.09G077500 Glycine max HOM05D001047 ORTHO05D000768 6.0e-06 56.2 162 32.1
Phvul.009G221800 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 6.0e-06 56.2 166 30.7
FAN13G2856 Fragaria x ananassa HOM05D002346 ORTHO05D002452 7.9e-06 55.8 227 29.1


User provided reference genes

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